Alosa sapidissima (American shad): 121697576
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Entry
121697576 CDS
T11137
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04510
Focal adhesion
asad04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121697576 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121697576 (lamb1b)
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
121697576
NCBI-ProteinID:
XP_041935074
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All DBs
Position
22:5308178..5339099
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AA seq
1760 aa
AA seq
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MLILLIATCMAFGSHAQMDVPEFGDVCAQGSCYPATGDLLIGRAHRLTASSTCGLQQPER
YCIVSHLQEEQNCFVCDSRQPGHPNSHTIRTVVTTFTPNRLVTWWQSEHGVENVTIQLDL
EAEFHFTHLIMTFKTFRPAAMVIERSMDNGKNWQVYRYYAHDCKRTFPDIPEGPIKKVDD
IICDSRYSEVEPSTQGEVIFRVLDPAFEIPDPYSVQIQNLLKITNIRVRMLKLHTLGDNL
LDIREEVRHKYYYALYEMVVRGNCFCYGHASKCAPSGQNEGDAEGMVHGHCMCNHYTTGL
NCEKCQDFYHDHPWKPALGLNTNACKRCECNHHAYACHFDMAAYLATGNISGGVCDECQH
NTMGRQCELCKPFYYQHPERHIRDPNICEPCSCDPRGSLNGGLCDGTTDVLASLIAGQCR
CKQNVEGERCDQCRPGHFGLSETPEGCQQCTCNPLGTVPGSNPCDTNSGSCFCKRLVMGQ
NCDQCQPQHWGLSNNMDGCRPCDCDQGGAVNNDCNPVTGQCVCREHMFGRRCDEIESGYY
FISMDHYTYEAEEAKFGPAVSVIQRPYPVDREPTWTGVGLARVPEGEELQFTINNLPETM
DYDLLIRYEPQLPAEWERVAVRVDRPVLEGPRCADTTTDQQAVSLPPGSRHVPLPEPICF
EEGQNFTVHLSLPFYSSQSDHQNPFIFIDSIVLMPHARSLDMFSSDVDWDTFERYKCQER
SQSVVKTQMTHICRDYIFSMSALLHQGAMKCVCDPHGSRSTVCEPNGGQCQCRTNVMGRS
CDRCVPSHFLYPNCRPCECDPQGSVTQFCADATGQCECVPGAYGRQCAHCLPSHWGFPHC
QPCHCNGHSQFCDPHTGECQGCRGNTAGHNCERCDDGFYGNALLEVGAQCRPCMCPDGPG
SRRQFAVGCYEDLYTQRVTCACSPGYTGPRCEQCAPGYYGNPEVPDGQCLPCECNGNIDL
MDPGSCDAHTGVCLKCLHYTEGSGCQYCKRGYYGDAKTQDCRKCMCNERGTSSQGCTAGE
CVCDEYSGQCPCLPSVVGQHCDQCAIDTWNYDSGEGCQACLCHPVHSYGSSCDQLTGQCS
CQPGFGGRTCEECRELFWGNPEVQCHGCDCDPRGISSEQCNKRTGDCVCVDGYAGRRCDS
CARGYSGQFPDCVRCHQCFSDWDVTVGELTNHTQRLLQTVEDARVGGVVAPYKDLIDSIE
QSVTELRAILEHDPVSKPLEDTQKRLQEATDLVAYLFRSLNVTELTLEVVSEEHNRTGSQ
LEELEMEAAKLHQTVRDVQDQVERVKNSNIRGASDSITKYYHQSIEAELRAHGATSSPSS
TVQESAVVRQTTEDMMNRTKAEFDLKQEQQTKQLEELANEIETLDLSTLSITACGAGSED
GSCGACGGLGCVTEDGAPHCGGEGCGDVNSVVQEGVNAAKNFDKEILKALQEVDKLNRMV
SEARGRADVARLNAQDVLLKANQSKERVELNNQELRSLIQQIRDFLRNSTDLETIEALSN
EVLAMSMPASAAQLEELTNEIRERVKSLTGVEEILDRSHGDVTQARMLLQDAKTASDDAT
EMKNTADMLNKWLNQTEHTQITTQDGIKEASADIKTTQDLQATLDSETASAELKLNNGMQ
SLVGMERDLSLIKAKTQEIVSTAQHTQRNTEYISQDVAQTKQELDSEVMKRYSTMESVMQ
QKAGNVIEGRQKAKELQEEAKRMLDHAMASLQKLRELERSYVVNQQTLEEKAQILAGLEK
AAKDVLQEISHKVTVYSICL
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcctgcttattgcaacgtgtatggcctttgggtctcacgcccagatggatgtc
ccagagtttggtgacgtgtgtgctcagggcagctgctaccccgccaccggagacctgttg
attggtcgagcccaccggctgacggcctcctccacatgtggactccagcagccagaacgc
tactgcattgtcagccacttgcaggaggagcagaactgttttgtgtgtgactccagacag
cctggccatcctaacagccacaccatcaggaccgtggtcaccactttcactcccaaccgc
ctcgtcacatggtggcaatcagagcacggcgttgagaatgtgaccattcaattggaccta
gaggccgagttccatttcacacatctcatcatgaccttcaagacattccgtcctgctgct
atggtgattgagcgttccatggacaatgggaagaactggcaggtgtaccgttactatgcc
cacgactgtaagaggaccttcccagatatacctgaggggccaatcaaaaaggtcgatgac
atcatctgtgattcacggtactcggaggtagagccgtccactcaaggagaggtgatcttc
agagttctggacccagcctttgaaatccctgatccctacagcgttcagattcaaaacctc
ctgaagataactaatattcgcgttcgcatgctgaagcttcacacccttggtgataacctt
ttggatatcagagaggaggtccgacacaagtactactacgcactgtacgagatggtcgtc
cgtggcaactgcttctgctatggccacgcctccaagtgcgccccatcgggtcagaatgag
ggggacgctgagggcatggtccatggtcactgcatgtgtaaccattatactaccggtctg
aactgtgagaagtgtcaggacttctaccatgaccatccatggaaacctgctctgggtcta
aacacaaatgcatgcaagaggtgtgagtgtaaccatcatgcatacgcgtgccactttgac
atggcggcgtacctggccaccggcaacatcagtgggggggtgtgcgacgagtgtcagcac
aacaccatgggccgtcagtgtgagctctgcaagcccttctactaccagcaccccgagcgc
cacatcagagaccccaacatctgtgaaccgtgcagctgcgaccctcgtggctctctgaac
gggggtctgtgcgatggaacgacggacgtgctcgccagtctgatcgctggtcaatgccgc
tgcaagcagaacgtggagggagagaggtgcgatcagtgtcgccctggacacttcggcctg
agcgaaacaccagagggctgccaacaatgcacctgtaacccactgggtacggttcctgga
tcaaacccatgtgacaccaactctggaagctgcttctgcaaacggctcgtcatgggccag
aactgcgatcagtgtcagcctcaacactggggacttagcaataacatggacggctgcaga
ccatgtgactgtgaccaaggcggggccgtcaataacgactgtaatccggtgacagggcag
tgtgtgtgccgggagcacatgtttggccgtcgctgtgatgagattgagtctggctactac
tttatctctatggaccactacacctatgaagcagaagaggccaaatttgggccggctgtg
agtgtgatccagaggccgtaccctgtggatcgtgagcccacctggacaggtgtggggttg
gccagggttccagagggggaggagctacagttcaccatcaacaacctcccagagaccatg
gactatgacctgctcatacgctatgagccacagttaccagcggagtgggagagggtggcg
gtgagggtggaccggccggtgctggagggaccgcgctgtgcagacaccactactgaccag
caggctgtctcactgcccccagggtccaggcatgtgcctctgccggagcccatctgtttt
gaggagggccagaacttcactgttcacctaagtctgcccttctactcctcccagagtgac
caccagaacccattcatcttcattgactcaattgtgctgatgccgcatgcacgctcgctg
gacatgttctcgtcagacgtggactgggacacgttcgagcggtacaaatgtcaggagcgc
agccagagcgtcgtcaagacgcagatgactcacatctgcagagactacatcttcagcatg
tctgctctgctgcaccagggagccatgaagtgtgtgtgtgatccccatggctcccgtagc
actgtgtgtgagccaaatggggggcagtgtcagtgccgaaccaacgtcatggggcggagc
tgcgacagatgtgtcccctcccacttcctgtatcccaactgcaggccctgtgagtgtgac
ccccagggctcggtgactcagttctgtgcggacgccactggtcagtgtgagtgtgttccg
ggggcgtatggacgccaatgtgcccactgtctgcccagccactggggcttcccccactgc
caaccgtgccactgcaacgggcactcgcagttctgtgacccgcacacgggtgaatgccag
gggtgccgcggcaacacagcagggcacaactgtgagaggtgtgacgatggtttctatggc
aacgcgctgctggaggtgggggcccagtgtcggccctgcatgtgtccagacgggccaggc
agcaggaggcagtttgctgtgggctgctacgaggacctgtacacacaacgcgtcacgtgt
gcatgcagtccagggtacacaggtccacgttgtgagcagtgtgccccgggttactatggc
aacccagaggtccccgacgggcagtgcctgccatgtgagtgtaacggtaacatcgacctg
atggacccggggtcctgcgacgcacacacgggcgtctgcctcaagtgcctgcactacacc
gagggcagcggctgccagtactgcaagaggggttactatggcgacgccaagacgcaggac
tgcaggaagtgtatgtgtaacgagcggggcaccagtagccagggctgcacggcgggcgag
tgtgtgtgtgacgagtacagcgggcagtgcccgtgtttgcccagtgtggtgggtcagcat
tgtgaccagtgtgccattgacacctggaactacgacagtggagagggctgccaagcctgc
ctgtgccaccccgtacactcatatggctcctcatgtgaccagctgacaggccagtgtagt
tgtcaaccgggttttggaggtcgaacttgcgaagaatgcagagaattgttttggggcaac
cctgaggtccagtgtcatggctgtgactgcgacccccgtggcatctccagtgagcagtgt
aacaagcgcacgggagactgtgtgtgtgtggacggctacgccggccggcgctgcgactcc
tgcgctcgcggctactccggtcagttccccgactgcgtgcgctgccaccagtgcttcagc
gattgggacgtcaccgtcggcgagctgaccaatcacacgcagcgcctgctccagactgtt
gaggatgctcgcgtgggcggggtcgtcgcaccgtataaggatttgattgacagcatagag
cagagtgtgacggagctgagggcgattctggaacatgaccccgtgtccaagccactggag
gacactcagaaacggctgcaggaggccacggacctggtagcgtatctgttccgctccctg
aacgtgacagagctgactctggaggttgtgtctgaggagcacaacaggaccggctctcag
ctggaggagctggagatggaggcggccaaactgcaccagaccgtcagggacgtgcaggac
caggtggagcgagtgaagaactccaatatcagaggagcctctgacagcatcactaaatac
taccatcagtccattgaagctgagctacgtgcccacggcgccacctctagtccatccagc
acagtgcaggagtccgccgttgtacggcaaaccacagaggacatgatgaaccgcaccaag
gccgagtttgacctgaagcaggagcagcagaccaaacagctggaggagctggccaatgag
atcgaaaccctggacctatcaacacttagcatcacggcatgtggtgcaggctcagaggac
ggcagctgtggtgcgtgcggcggtctcgggtgcgtgacggaggacggagcgccccactgt
ggcggggaggggtgtggcgacgtcaactcagtcgtgcaggagggcgtgaacgccgccaag
aactttgacaaggagatcttaaaggccctacaggaggtggacaagctcaacaggatggtg
tcagaggctcgtggtcgagctgacgttgctaggctgaatgctcaggacgttttgctgaaa
gccaatcagagtaaagagagggtggagcttaacaaccaagaactacgcagcctcatacaa
cagatacgggacttcctgagaaacagcacagacctggagactatcgaggcgctgtccaat
gaggtgctggcgatgagcatgccagcgtcggcagcccagttggaggaactgaccaatgag
atccgagagcgtgtcaagagcctgaccggcgtggaggagatcctcgaccgcagccacggc
gacgtcacacaagcacgcatgctgctgcaggacgccaaaaccgccagtgatgatgccact
gaaatgaagaacacagcggacatgttgaacaagtggttgaatcagacagagcacactcag
ataaccactcaagacggcatcaaagaggccagcgctgacatcaagacaacacaggacctg
caggctactctggattcagagactgcgtctgctgagttgaagttgaataacgggatgcag
agtctggtggggatggagagggatctttcgttgattaaagccaaaacgcaggagatagtc
agcacagcgcaacacacacagcgtaacactgaatacatctcacaggatgtggcacagacc
aaacaggagctggactcggaggtgatgaagaggtactccaccatggagagtgtgatgcag
cagaaagcaggcaatgtgatcgagggccgacaaaaagccaaggagcttcaggaggaggcc
aaacgcatgctggaccacgccatggcctccctgcagaaactcagagagctagagcggtca
tatgtggttaaccagcagactctagaggaaaaagcccagattctggcggggcttgaaaaa
gcagccaaggatgtgcttcaggagatcagtcacaaagtcaccgtctacagcatctgtttg
taa
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