Alosa sapidissima (American shad): 121697825
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Entry
121697825 CDS
T11137
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1 isoform X1
KO
K08367
runt-related transcription factor 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121697825 (runx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121697825 (runx1)
Transcription factors [BR:
asad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
121697825 (runx1)
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GFIT
Motif
Pfam:
Runt
RunxI
Motif
Other DBs
NCBI-GeneID:
121697825
NCBI-ProteinID:
XP_041935510
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Position
22:13081900..13133242
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AA seq
470 aa
AA seq
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MTGMNPGGFSSSTGLSWAMYLMRKGRNSNSLFDPAPGRRFTPPSTTLGSGGKMSEGLPLG
AQEGSGATLVGKLRMADRSMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKV
VALGDVPDGTLVTVMAGNDENYSAELRNATAALKNQVARFNDLRFVGRSGRGKSFTLTIT
VFTNPPQVATYQRAIKITVDGPREPRRHRQKLEESVKPGTLAFSEQLRRSAMRCSPNPNA
RNTLTTPPFGSPAHTQLPDSRQMQTSPSWSYEQPYPYLSQISTPTVHPTTPISPSRNSIH
CSELTAFSDPRMTLERPFTSLSTIPDGRFADPRMHYPTGAFPYPPTPVTNAIGIGMSAMT
GPTGRYPTYLPPPYPSASSQGQGGPFQASSSPYHLYYSTTAGSYQFSMMAGGGGGERSPP
RILPPCTNASTGSTLLHPSLPNQSDVVVETEGSHSSSPTNMSAEAVWRPY
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcatgaaccctggaggcttcagctcatccaccggtttgtcctgggccatgtac
ctgatgaggaagggccgaaacagcaactctctctttgaccctgccccagggcgccgcttc
actcccccctccaccaccctggggtccggtgggaagatgagcgagggtctccccctcggc
gcccaggagggcagtggtgctaccctggtgggcaagctccgcatggcggacaggagcatg
gtggaggtgctgtccgaccatccaggggaactggtgcggaccgacagtcccaacttcctg
tgttccgtgcttcccactcactggcgttgtaacaagaccctgccaattgcatttaaggtg
gtggccttgggagacgttcccgacggaacgctggtgaccgtgatggcggggaacgacgag
aactactcagcagagctgcgcaacgccacggcggccctcaagaaccaggtggcacgcttc
aacgacctgcgcttcgtcggccgaagtggtagaggtaaaagtttcactctgaccatcacc
gtgttcacaaacccaccccaggtggccacctaccagcgcgccattaagatcacagtggac
gggcctcgagaaccacgccgacacaggcagaagctggaggagtcagtgaagcccggcacg
ctggccttctctgagcagctcagacgcagcgccatgcggtgcagccccaaccccaacgcc
cgcaacacactcaccacgccacccttcggcagccccgcacacacacagctgcccgactcc
aggcagatgcagacgtctccgtcctggtcctatgagcagccatacccctacctgagccag
atctccacgccgactgttcacccgacaacgcccatctcgcccagtcgcaactctattcac
tgctctgagctaacagcattcagtgacccccgcatgaccctggaacgacctttcacctca
ctgtccacaattccagatggccgcttcgcagacccacgcatgcactacccgaccggagcc
ttcccgtaccctcccacgccggtcaccaacgccattggtatcggaatgtcagccatgacg
ggcccgaccggccgctaccctacctacttgcctccgccttacccctctgcctcctcccaa
ggtcaaggtggtccattccaggccagctcgtctccctatcacctctactatagcacaaca
gctgggtcataccaattttccatgatggcagggggaggtggcggggaacggtcacctcct
cgcatcctgcccccctgcaccaatgcctccactggctccaccctcctccacccctccttg
cccaatcagagtgacgttgtcgtggagacggaggggagccacagtagctctcccaccaat
atgtcggcagaggcggtgtggcggccatattga
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