Alosa sapidissima (American shad): 121698126
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Entry
121698126 CDS
T11137
Symbol
zc3h13
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121698126 (zc3h13)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
121698126 (zc3h13)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121698126
NCBI-ProteinID:
XP_041935851
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All DBs
Position
23:25065706..25081717
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AA seq
1868 aa
AA seq
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MSKIRRKVTVENSKTISDSSTSTTPSRRPSVFERLGPSTGGNAAETHCRNWLKTGNCSYG
NTCRYTHGTQPRGKGFSGTFSRSAERPTGDLRERMRNKRQDAEADAQKRDPEEPTSPTTR
KQRDSSRGRHREKEDIKITKERTPASEEEPAEWEGTREDSDNGDYDYELSLEMKRQKIQR
ELMKLEQENLDKRDEIVIKKEESTPKNRPSSMSKASPERGSSKGSPSSRKSSGSPKYKAS
GKSAGSVKKEKSSSSSVISSPVSDQTRAEESETRFSKGGHGKKKGPRTPSPPPPVPVETH
VVGKKHKGKHKNKDKSEDRSKEGKERGRDTEKHKEKKDKRRDRSESSHKAKRSVTSDERS
GSVSSPSRDVSPLGRRKSSSPKVSSQKPPASASPHRSRQQHSPSPSTARHHSPSSHSGSR
SSAQRHTPSPRRRNRSPPSPSYPRSEPGPPASSSSPPPSSSSSALRRSRSPLTPRGPSPP
GQRRASPGRRHSQGRERGGRGERDRSPPPQERRHERRDESRGRREKESGRDERDYEPEQS
SSRDNRDDRDSRDSRDRRDGRDRRDGRDERLHRQDGKDARGDASRSDARSTRDPPEHRER
ERERDRERERDRERERGEAHRKDDAAAAAAPEDRGSYGKGHSREEGRSETRTEARSDARA
ERGGRGRGRGAEATDKGSSRGSRASPGDRGHDSWESKSGVRERSAERGSERGGDSKATDR
GNERTTDRYGNERPRGEQARDSSYDRRSGHADRERRDNRDREVRAPSPGRHQSRGEEPER
EERRDERRTERADDRRDERPRERERDREREREKEKEKEKEKEREREAERERERVRERDRE
REREREREREREREREEREREREREEREREREERERERERERKEREREREQRERERQRDW
EEREKGREERRERRDDTRDDRPVRDSVEERKASRKRHRVETTPSPRSSPKRAREASPADS
DGYNSSEEKGEKHRLLSQVVRPQDPPRSPPPPPRVPAEEKPSRWKEEDRRPDKKDVRGRA
HEEARGGGADRRGEQEGVSAPSDTRRGKEREASPPASVPVPTAEEREPPVVAGHEEGKKK
TKGQKKGLKKNRREEDRAGGVAGRDERFNPEPVVSNPPPPLLSPRKVPKKKALDKKRKRS
RGGDSDASEDEPGAGHHPLSKRSRRGPRTPPPINKEDLLSQRVLAASQRSPLTLPLSDWS
DEDVPDRGEPPPPPPPPPPPPPVQPIPEPRTLLPAEALPSRRLGRGRTDPPIAPLLPDPP
MLLPTPPLQPLLPQHMLRKPLLPNAPMDAHPAGVRPGVLGNAPGQRSSRRLRSPSGEAHR
DENPQVPRARRGRPPVGNAARDRERERERERERERERERERERERAAVGESVGAERKSRI
DQLRRGEPSRSTSSDRQDSRSHSSRRSSPESERQARSRAGSYDSRERDRDRERDVFDRKD
PRQPPGPPGLGLGLGLGLGLGLGLGLSPAGVPQQPRDWEQEPQRDWAPRGPREPLLPHRG
ANREPIRERERDNMREPRERERLLPEGLLSGAVHERLERERERERAEREREHREREREQR
ERERERERERERSERERLLPIDPVPHGDPKGRGDGRMERADYEPLLPRETVAINPDKPVD
SAHAQAEAAEEEKGDSLDEEDEGKGEDAQSIVSGGEEYEPISDDELDEILADSAQKREDQ
QDDERVPGPLDVIDVDWSSLMPKQKQEPRAPGAALLRFTPGAVLLRAGVSRRLAGPHLLA
RVKEVCKSELDDPKDADRLFEHDLGALNMAALNRRVERANLLRNLGSGCKALSARRDIAI
RKQLLKNDKGTTKQMYTTPPVGDSELLQLSVRLFKKALASSQTADLERAQTSAASAPGAA
PSGAVCVS
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtaacagtggagaattcgaagaccatatctgacagcagt
acaagcaccacaccctctcgaaggcccagtgtttttgagagactcggccccagtaccgga
gggaatgctgcggagacacactgtagaaattggttaaagactgggaactgcagttacggc
aatacttgtcgctatacacatggaactcagccaaggggcaaaggcttttctggaacgttt
agcaggtcagcagagaggcccacaggggatctccgggagaggatgaggaataagagacag
gatgctgaagcagatgcccagaaaagagacccagaagagcctacatcacccacaaccaga
aagcagcgcgactcatctcggggacggcaccgggagaaggaggacataaagattaccaag
gagagaactccagctagtgaggaagagccagcagagtgggagggcacccgagaagactct
gataacggtgactacgactacgagttgtctttggaaatgaagaggcagaagatccagcgt
gagctgatgaagctcgaacaagagaacttggacaagagagatgagatcgtcatcaagaag
gaggaatcaacccctaagaacaggcccagcagcatgtctaaggcttcccctgaacgcgga
agctccaaaggttccccctcgtcccgcaagtcaagtggctcccccaagtacaaggcgtca
gggaagagcgcaggctctgtgaagaaggagaagtcgtcttcctcttccgtgatctcctct
ccggtgtccgaccagactcgggcagaggagtcggagactcggttctctaaggggggtcac
gggaagaagaaaggcccgcgcacccccagcccccctccgccggttcccgtggagacccac
gtggttgggaagaagcacaaaggcaaacacaagaacaaggacaagtctgaggaccggtcc
aaggagggcaaggagaggggccgcgacacggagaagcacaaggagaagaaggacaaacgg
agggaccggtcagagagctcccacaaggccaagaggtccgtgacgtcagatgagcggtct
ggaagcgtttcctcgccctccagagacgtgtcgcccctcggcaggaggaagtcctcctcc
cccaaagtgtcctcccagaaaccccccgcctctgcatccccacaccggtcccgtcagcag
cacagtccgtccccctcgacggcgcgccaccactccccgtcctcccactcgggctcgcgc
tcgtccgcccagagacacacgccttccccacgccgccgcaaccgcagccccccgtcgccc
tcgtacccgcggagcgagccgggcccccccgcctcctcctcctcccctccgccctcgtcc
tcctcctccgccctgaggcgctcgcgctcacccctgaccccgcgtggaccctcgcctccg
ggccagcgccgggccagccccggccgacgccactcgcagggccgcgagaggggagggcgc
ggcgaacgagacaggagcccgccaccgcaggagcgacgccacgaacgcagagatgagtct
cgcggcaggcgtgagaaggagagcggtcgagacgagcgggactacgagccggagcagagc
agctcgcgagacaacagagacgaccgcgattcccgcgacagccgcgaccggcgagacggc
agggaccgccgcgacggccgagacgaacgtctgcacagacaggacgggaaggacgcccgc
ggggacgcgtccaggagcgacgcgcgctccacgcgggacccgcccgagcacagggagcga
gagcgcgagagggacagggagagggagcgagaccgcgagagggagcgcggcgaagcgcac
cggaaggacgacgccgccgccgccgccgccccagaggatcgtgggagttacgggaagggc
cacagccgcgaggagggaaggagcgaaacgcggaccgaggccagatcggacgcccgcgcc
gagagggggggccgaggtcgaggccgtggagccgaggccacagataaaggttcatctcga
ggctcgcgagcatcaccaggtgaccgcggtcatgacagctgggagtccaagagcggcgtt
cgcgagcggagtgcagagagaggctcggagcgcggaggcgacagcaaggccaccgaccga
ggtaatgagcggaccaccgatcgctatggcaacgagcggccgagaggcgagcaggcccga
gactcctcctatgaccgcaggagtggccatgccgaccgcgagcgcagggacaaccgggac
agagaggtgagggcgccctcccctggccgacaccagagccgcggagaggagccggagcgc
gaggagcggagggacgagcgcaggactgagagggcggacgatcggcgagacgaacgcccc
cgggagcgcgagcgtgaccgcgagagggagagggagaaggagaaggagaaagagaaggag
aaagagagggagcgcgaggcggagcgcgagcgcgagagggtccgagaacgggaccgggag
agggagagggagcgcgagagagaacgggagcgagagagggagcgcgaggagcgagagaga
gagcgggagagggaggaacgcgagagggagagggaggagcgagagagggagagggagcgg
gagaggaaggagagagaacgcgagcgcgagcagagagagagggagcggcagagggactgg
gaggagagggagaagggaagagaggagcgcagagagaggagagacgacaccagagatgac
cgccccgtccgagattctgtcgaggagcgcaaggccagtcgtaagagacaccgagtggag
accacacccagcccccgctcgtctcccaaacgtgcccgcgaggccagccctgcggacagc
gatggctataacagctcagaggaaaaaggtgagaagcaccgcctgttgagccaggtggtc
cgccctcaagaccctccccgctccccccctcctccgccccgtgtgcccgctgaggaaaag
ccctcccgctggaaggaggaagaccggcgtccagacaagaaggacgtgcgtggacgagcc
cacgaagaggcccgcggaggcggcgccgaccgccgcggagagcaggagggcgtttcggcc
ccgtcggacaccaggaggggcaaggagcgagaggccagtccccccgccagcgtccccgtt
ccgaccgcagaggagcgcgagccgcccgtggtagcgggccacgaggagggcaagaagaag
accaaaggccagaagaaaggcctgaagaagaaccggcgcgaggaggaccgggcaggcggt
gtcgccggacgtgacgagcgcttcaacccggagcccgtggtcagcaacccgcctcctccc
ctgctctccccgaggaaggtgcccaagaagaaagcgctggacaagaagcgcaagcgctcg
cgtggcggagactctgacgcctcggaggacgagcccggagccggacaccacccgctcagc
aagcggtctcgccggggcccacgcacgccaccgcccatcaacaaggaggacctgctgtcc
cagagggtcctggcggccagccagcgctcgcccctgaccctgccgctcagcgactggtcc
gacgaggacgtccctgaccgcggcgagccgcctccacctccccccccgcctcctccaccg
cccccggtccagcccatcccagagcccaggaccctgctgcccgccgaggcgctccccagc
aggcggctcggacggggcaggacggacccccccatcgccccgctgctccccgaccccccc
atgctgttgcccacgccccccctgcagcctctgctgccccagcacatgctgcgcaagccg
ctcctgcccaacgcgccgatggacgcgcaccccgccggtgtgcggcccggtgtcctaggc
aacgcgcccggccaacgctcctcccgccgcctgcggtcaccctccggcgaggcgcaccga
gacgagaacccgcaggtgcccagggcgaggaggggccgcccgccggtgggcaacgcagcc
cgggaccgcgagcgcgagagggaacgagagcgcgagagggagagggagagggaacgcgag
cgcgaacgggagagggcggcggtcggggagtcggtcggggccgagaggaagtcccgcatc
gatcagctgaggagaggagagcccagtcgcagcacgtcatcagatcgccaggactcccga
agccacagttcccgacgaagctcccccgagtccgagcgccaggcgcgctctcgtgcgggc
tcctacgacagccgagagcgtgaccgagaccgcgagcgcgatgtcttcgaccgcaaggac
ccgaggcagccgccagggcccccgggactcgggctgggtctcggtctgggcctgggtctg
ggcctgggtctgggcctcagtccggccggggtcccccagcagcccagggactgggagcag
gagccgcagagggactgggcaccccgcggcccccgagagccgctgctgccccatcggggc
gccaaccgcgagcccatccgcgagcgcgagcgggacaacatgcgggagcctcgggagcgc
gagcgcctgctgcccgagggactcctgtccggcgccgtgcacgagcgcttggagcgcgag
agggagcgcgagcgagcggagagggaacgcgaacaccgcgagagagagcgggagcaacgc
gagcgcgagagggagcgcgagagggagcgcgagcggagcgaacgggagagactgctcccc
atcgaccccgtgccgcacggagaccccaagggcagaggtgacggacgcatggagcgcgcc
gactacgagcccctgttgccacgggagactgttgccattaatcctgacaagccagtggac
agcgcgcacgctcaagccgaggctgctgaagaagaaaagggggacagccttgacgaagaa
gacgaagggaaaggagaggacgcccagtcgatcgtctctggaggtgaagagtacgagccc
atcagtgatgatgaactggacgagattcttgcagacagtgctcagaaacgagaggaccag
caggacgatgagagagtcccaggtcctctggacgtgatcgacgtggactggtccagcctg
atgcccaagcagaagcaggagccgcgggccccaggggcggctctgctcaggttcacccct
ggagccgtgctgctcagggcgggcgtctcgcgccgcctggccgggccccatctcctcgcc
cgcgtcaaagaggtctgcaagagcgagctggacgaccctaaagatgctgaccggctgttt
gagcatgacctgggcgctctcaacatggcggcgctgaacagacgcgtggagcgggccaat
ctcctgcgcaacctgggctctggctgcaaggccctcagcgcacggcgggacatcgccatc
cgcaagcagctgctgaagaatgacaaaggcaccaccaagcagatgtacacgaccccccca
gtgggagactccgagctgctgcagctcagcgtacgtctctttaagaaggccctcgcttcc
agccagacggctgacctggagcgcgctcagaccagcgcagctagcgccccaggtgccgcc
ccctctggcgcggtgtgtgtctcctaa
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