Alosa sapidissima (American shad): 121698287
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Entry
121698287 CDS
T11137
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121698287
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121698287
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121698287
NCBI-ProteinID:
XP_041936183
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All DBs
Position
23:11459811..11489712
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AA seq
942 aa
AA seq
DB search
MGLKDHLDDGTGHILDLGIDLDYLHVKATASDRPPSEANAHTKMEPGPSEEAEGRLPAGT
SLGSSSGIGSTPADSEESTDSEAEQINLPPRSAHPQLCRSPCLDLESSSPPPGSSISEDA
DPVGTLRAYQNKMEFALKLGYQEDLIRLVLSKLGPEALINDILGELVKLGSKPEAEQGGG
PAASQSRSSSMAPSSSSCSSSGSTTSSSGCGFSDSTESRQSDSPSQMDSLDDKDNLRPIV
VDGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHRDITVFVPAWRKEQSRPDALITDQEFL
RRLEKDKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPEWKKF
IDERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIIPEHKKQPCPYGKKCTYGHKCK
FYHPERGTQPQRSVADELRASAKSCSAKVPVESGLVKSHSMPGSQRPAEAKRAQAKRQSD
PSVRALSYSDVEERLTSRSPKLDPSHGKGSATLLPAPGGPPMGHGHGHGHGHGHGHRQDL
TREYPHPSGKPHSLGMLPSQYPTCESPDLSYCSLVRAYSGLRIAVPPRSPERRMLPDALL
SDCSSEGSASCGSSSTDSYVGVLGPAGERSCMSSPDLLLDDAGGPLRCPHHHLGQQQQPH
HHHHHHHRGSAQYPPPLPPPQTPPQHHLHQGHVLAPVPVPGYHHHHHHHHQQQQQQPQSL
TPHGYSFSLDEPPDSPLFNKHSRPYLSPQLQHQTVAARSSCPGDCPPLPGGSHPQSSPLG
RGLASTRADSVSDSRLYESSPLLPRKALYMGQERLGGWDPYYLQPPPPQAPPQPCYESFT
FQGLQESREQAWRAPWGRGPSQPPPPPHPSHSPQPQPMGSLNPPEPPPISRHQEVRQKVF
KNLCNIFPTELVRMVMGRYPHITDAQQLAAAILAEKSQPGAY
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatctagatgatggaacaggccacatccttgacctcgggatcgat
ctggactacctgcacgtgaaggctactgccagtgaccggccgccctccgaagcgaatgcc
cataccaaaatggagcctggcccgtcggaagaggccgagggcaggctaccagctggaaca
agcctgggcagcagcagcggcatcggttccacacccgctgactccgaggagagcactgac
agcgaggcggagcagatcaacctcccgcctcgctctgcccatccccaactctgccgttcc
ccgtgtctggacctggagtcctcttcacctccgccaggcagttccatctctgaagacgca
gaccctgtgggaaccctgcgcgcctaccagaacaagatggaatttgcgttgaagctcggc
taccaggaagaccttattcggctggtcctcagtaaactgggacccgaggcactgattaac
gacattcttggtgagctcgtcaagctgggaagcaagccagaggccgagcagggaggcgga
ccggcagcatctcagtccaggtcttcatcgatggcaccctcctcctcctcctgctcctcc
tcaggatccaccacctcctcctcaggctgtgggttctcggattctacagagtcccgtcag
tcggattctccctcacagatggactctctggatgacaaggacaacctgaggcccattgtg
gttgacggcagcaacgttgccatgagccatggcaacaaggaggtcttctcatgccaaggc
atccagcttgcagttgactggttcctggagcgaggacaccgtgacatcactgtgtttgtc
ccagcttggaggaaggagcagtctcggcctgatgctctcatcacagaccaggagtttcta
cggcggctggagaaggacaaaatcctcgtgttcactccctcacgacgggtgcaaggtcgt
agggtggtctgctacgatgaccgtttcattgtcaagctagcctacgagtctgacggcatc
atagtctccaacgacaactaccgagacttagccaatgagaagccggagtggaagaagttc
attgatgagaggctgctgatgtattcattcgtcaatgacaaattcatgcctcctgatgac
cctttaggtcggcatggcccaagtttggagaactttctgcgaaagcgaccaatcattcca
gaacacaagaagcagccctgcccttacggtaagaagtgcacctatgggcacaaatgtaag
ttttatcaccctgagcgtggcactcagccccagcgctcggtggcggatgagctccgcgct
agcgccaagagctgctcggccaaggtgcccgtggagtcggggctggtgaagagccacagc
atgccgggcagccagcggcccgccgaggccaaacgggcgcaggccaagcgccagtctgac
cccagcgtccgcgcactgtcctacagcgacgtggaggagaggctgaccagccgctccccg
aaactagacccgtcccacggcaaagggagtgccaccttgctgccggctcccggcgggcca
cccatgggccacggacacgggcatggccatgggcacgggcacgggcacaggcaggacctg
acccgggagtacccccacccatcggggaagcctcactcgctcggcatgctgccgtcccag
taccccacgtgcgagtcgccggacctgagctactgctcgctggtgcgggcatactcgggc
ctgaggatcgccgtgccgccgcgcagccccgagcgccgcatgctgcccgatgcgctcttg
tcagactgcagcagcgagggcagcgccagctgcggcagcagcagcacggactcctacgtt
ggcgtgctgggccccgcgggcgagcgctcgtgcatgagctcacccgacctgctgctggac
gacgctggcggtcccctccgctgcccccaccaccacctcggtcagcagcagcagccgcac
caccatcaccatcaccaccaccggggcagtgcccagtacccgccccctctgccgcctcct
cagacgccccctcagcaccacctgcatcagggccacgtgctcgcgcccgtcccggtgcca
ggctaccaccaccaccatcaccaccatcaccagcagcagcagcagcagccacaaagcctg
acaccacacgggtacagcttcagcctcgacgagcctcccgactcgcccctcttcaacaag
cactcgcgaccgtacctgtcgccacagctccagcaccaaaccgtggccgctcggtccagt
tgtcctggggactgtccgcccctgccgggcggctcgcacccccagagctctcccctgggc
cggggactggcctccacgcgggccgacagcgtatcggactcccgcctgtatgagagctca
ccactgctgccccgcaaggccctctacatgggccaggagcgactgggcggatgggacccc
tactacctgcagccgcccccaccgcaggcccctcctcagccctgctacgagtccttcacc
ttccagggcctccaggaaagccgtgagcaggcctggagggcaccgtgggggcggggcccc
agccagccgcctcctcctcctcaccccagccactcaccccagcctcagcctatgggctcc
ctcaacccccctgagcctccccctatcagtcggcaccaggaagtgcgtcagaaggtgttc
aagaacctgtgcaacatcttccccacagagctggtgcgcatggtgatggggcgctaccct
cacatcacagacgcccagcagctggcagcggccattttggcagagaagagccagcctgga
gcttactga
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