Alosa sapidissima (American shad): 121698596
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Entry
121698596 CDS
T11137
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03015
mRNA surveillance pathway
asad03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121698596
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121698596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121698596
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
121698596
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
121698596
NCBI-ProteinID:
XP_041936765
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Position
23:29117286..29133320
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AA seq
579 aa
AA seq
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MADGVDHIDIYADVEEEFNQGEDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDNLPQPV
GSEGGKGPSSNVVYTYTGKRIALYIGNLTWWTTDEDLSDAIRSIGINDVLEIKFFENRAN
GQSKGFALVCVGSDASSRKLLDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQSGQM
SGEGKAGPPGIGRGGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPFPGPGAITHRHPN
SQLMDMNFNCFQPGRDGSWRPRGGMQGPPRPPPGPPGPPGPPGPPPPGQGLPPPLSGPPN
RGDRPPPPVMFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFPPRPPGPIG
PPMALAPPPHMQGPPPGGPPPAPHVNPAFFPPPGNNNMPSSDSRGPPPNDPYGRPPPYDR
GDYGPGGREMDSARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAI
SLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASRRERSRERDHSRSREKSRRHKSR
SRDRHEDYYRERSRERDRHRERDRDRERDRDREREYRHR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggtgtggatcacatcgatatttacgcggatgtagaagaggagttcaatcag
ggtgaggattacccagtgcacgaccagatagacttgtacgatgacgtaatctctccgtct
gccaacaatggagatgccccagaggaccgggactacctggacaatttgccccagcctgtg
ggctcggaggggggcaagggcccttcatctaacgtggtctacacatacacgggcaagagg
attgccctgtacattggaaacctcacatggtggacgacagatgaagatttgtcagatgcc
attcggtcgataggtattaatgacgtgcttgagatcaagttctttgagaaccgcgccaat
ggccagtcgaaagggtttgcgctggtgtgtgttggttctgatgcttcttccagaaagcta
ctggacctgctgtctaagcgcgaacttcacgggcagaaccccatcgtcacaccgtgcaac
aaacagtccctcagccagtttgagatgcaatcccggaaaagcacacaatcaggtcaaatg
tctggcgagggtaaagctggcccgcctggtatcggccgcggcggcttccccatgggccga
ggccgagggcgcttccccggccccccaggtccaggaggagatcgtttccccggcccagtt
ggacccggaggccctccacccttcccagggcccggggccataacccataggcaccccaac
agccagctgatggatatgaatttcaattgcttccagccgggccgcgatgggagctggcga
cccagaggaggcatgcagggaccaccccgccctccacctggcccacctggcccccctggc
ccccccgggcccccacctccgggacagggtctgcccccacccctctctgggccccctaac
agaggcgatcgcccccctcccccagtcatgttcccaggccagtttggccagccccccatg
ggacccctccccccaggtcctcccccacctggctacggccctcctcccggcccccctccc
ccccagcaaggccctcctcccccaggtcccttccccccacgcccccctggtcccataggc
ccccccatggccctggcaccccctccacacatgcagggtcccccccctggtgggcccccc
cctgcccctcacgtcaaccccgccttctttcccccgcccggcaacaacaacatgccctcg
tcggacagcagaggccctcctccaaacgacccctacggccggccgcctccttacgaccga
ggagactacggccctggtggcagggagatggattcggcacggaccccgctgagcgaagca
gagtttgaggagatcatgaaccgtaacagggccatttccagcagcgctatctcacgtgcg
gtgtctgacgcaagtgctgcggactatgggagtgcgatagagacgttggtgactgccatc
tctctgatcaagcagtcgaaagtgtctgctgacgatcgctgtaaagtcctcatcagctcg
ctacaggactgcctgcacggcatcgagtccaagtcctacggctctgcgtcgagacgggag
cgctctcgtgaacgtgaccacagccggtcgcgagagaagagtcgccgacacaagtcgcga
agccgtgaccgccacgaggactactaccgggaacgtagccgcgagcgggatcgccaccgc
gagagggaccgagaccgcgagagagatcgagaccgcgagagggagtaccggcaccgctag
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