Alosa sapidissima (American shad): 121699581 Help Entry 121699581         CDS       T11137                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism asad  Alosa sapidissima (American shad) Pathway asad04510   Focal adhesion asad04512   ECM-receptor interaction asad04518   Integrin signaling asad04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:asad00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121699581 (col1a1b)    04518 Integrin signaling     121699581 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     121699581 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     121699581 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:asad00536]     121699581 (col1a1b) Glycosaminoglycan binding proteins [BR:asad00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121699581 (col1a1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd TILa Motif Other DBs NCBI-GeneID:  121699581 NCBI-ProteinID:  XP_041937770 LinkDB All DBs Position 24:24102056..24128396 Genome browser AA seq 1448 aa AA seqDB search MFSFVDIRLGLLLAAAVLLVRAQGEEDESTFGSCTLDGQLYNDKDVWKPEPCQICVCDSG SVMCDEVICEDTSDCANPEIPDGECCPICPEDSFPTDEPVVVPVGPGEKGDPGPPGVPGN DGIPGQPGLPGPPGPPGPNGIGGDFRTASQMSYGGDKSSGPSVPGPMGPMGPRGPPGPSG SSGPQGFTGPPGEPGEPGAPGPMGPRGPGGPPGKNGDDGEAGKAGRPGERGPAGPQGARG FPGTPGLPGIKGHRGFPGLDGAKGDAGMAGPKGEAGSPGDNGAAGAMGPRGMPGERGRPG PPGPAGARGNDGNGGAGGPPGPTGPAGPPGFPGSAGAKGETGPGGSRGSEGPAGSRGEPG NPGPAGAAGPAGNPGSDGAPGAKGATGAPGIAGAPGFPGPRGPAGGAGAGGAPGPKGNNG DVGAPGAKGEAGPKGEPGPAGSQGPAGPSGEEGKRGARGEPGGAGPVGAPGARGGPGARG FPGADGTPGPKGGPGERGNPGPMGSKGATGEPGRPGEPGMPGSKGMTGSPGAPGPDGKAG ASGAPGQDGRAGPPGPSGARGQPGVMGFPGPKGPGGEAGKAGEKGPSGAVGAVGAAGKDG DVGAPGAPGPAGPAGEKGEQGPAGPPGFQGLPGPQGSTGEPGKPGEQGMPGEAGPSGPSG ARGDRGFPGERGANGPTGPAGARGAPGSPGADGAKGEAGAAGVPGSQGPTGMQGMPGERG AGGMPGLRGERGEPGVKGPDGAAGKDGHRGLTGPIGPSGPSGAPGEKGEGGPVGPAGVSG ARGAPGERGEGGAPGPAGFAGPPGMDGQAGAKGDKGDTGPKGDAGAPGPAGPLGAPGPQG PAGATGSKGARGGAGPPGATGFPGAAGRVGPPGPSGAGGPPGPTGPSGKEGQRGARGEKG PAGRPGEVGAAGPPGPSGEKGSPGNDGAPGPMGISGPQGIAGGRGIVGMPGQRGERGFPG LPGPGGEPGKQGSGGPVGERGPPGPLGPPGLTGPPGEAGRDGSQGHDGAPGRDGPAGSKG DRGETGNAGSPGGPGAPGPPGSVGPSGKTGDRGEAGPAGNVGPAGPSGPRGAPGPAGARG DKGEAGEAGDRGMKGHRGFSGMAGLPGPPGPPGEQGPAGATGPGGPRGPHGSNGSPGKDG MNGLPGPVGPPGPRGRNGEMGPAGPPGPPGPPGPAGAPGAGMDFFPQPQQEKGPDPMRGG YRADDASVVRDRDQDVDTTLKSLSQKIENIRSPEGTQKSPARMCRDLRMCHPEWKSGFYY VDPNQGSPLDAVKVFCNMETGETCVSPSQASVPQKNWYTSKNKDKKHVWFSESMTEGFQF QYGTDGSDPEDVNIQLTFMRLMSNEASQNLTYHCKNSIAYMDQASGNLKKALLLQGSNDI EIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYRTTKTSRLPIIDIAPMDVGAPDQEFGV EVGPVCFL NT seq 4347 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagggctgttgctcgccgcagcagtacttttggtg agagcgcaaggagaggaggacgagagcacattcggtagctgtacgttggacggccagttg tacaacgacaaagatgtttggaaaccagagccttgtcagatctgcgtctgcgacagcgga agcgtcatgtgcgacgaagtgatttgcgaggatacatccgactgcgccaacccagaaatc cccgacggagagtgctgccccatctgcccagaagactcattccccaccgatgagcctgtg gtggtaccagttggtcctggagagaaaggagaccccggccctccaggagttcctggtaat gatggtattcccggtcagcctggacttccaggacccccaggcccccctggacctaatggc attggtggagacttccgtacggcttcccagatgtcctatggcggagacaagtctagcggc ccctctgtccctggtccaatgggcccaatgggtcctcgcggacctcctggacctagcgga tcctccggccctcagggtttcaccggaccccctggtgagcctggcgagcctggtgcacct ggtcccatgggtcctcgcggtcctggcggtcctcccggcaagaacggagatgatggtgag gctggcaaggctggtcgccccggtgagcgcggtcccgctggtcctcagggtgctcgtggt ttcccaggaacccccggactccccggaatcaagggacacagaggattccccggtcttgat ggagccaagggagatgctggaatggctggacctaagggagaggctggttcccctggagac aatggagctgctggtgccatgggacctcgtggtatgcccggcgagagaggccgtcctgga ccccctgggcccgctggtgctcgtggtaatgatggcaatggtggtgctggtggaccccct ggacctactggccccgccggacccccaggattccctggatctgctggagctaagggagag actggccccggaggcagccgtggttctgagggacccgctggttcccgtggtgagcctggt aaccccggacctgctggtgctgctggccccgctggtaaccctggatctgatggtgctccc ggtgccaagggtgctactggtgcccctggtattgctggtgcccctggcttccctggaccc cgtggacccgctggaggagcaggagctggtggtgcccctggccccaagggtaacaacgga gatgttggagcccccggagctaaaggagaggctggacccaaaggagagcctggccccgct ggatctcagggacccgctggcccctctggcgaggagggaaagagaggcgctcgcggtgag cccggtggtgccggacctgtcggagcccctggagcccgtggtggtcctggtgctcgtggt ttccctggtgctgatggaactcctggccctaagggaggtcctggtgagcgtggtaacccc ggtcctatgggatccaagggagcaactggcgagcccggtcgtcctggcgagcctggtatg cccggatccaagggtatgactggtagtcctggagctcccggacccgatggcaaagctggc gcctctggagccccaggacaagatggccgtgctggaccccctggcccttcaggagccaga ggacagcctggtgtgatgggattccctggccccaagggacctggtggtgaggctggcaag gccggagagaaaggaccttctggagctgtcggtgctgttggtgctgctggcaaagatggt gatgttggcgctcctggtgcccctggacccgctggacctgctggagagaagggagagcag ggacctgcaggcccacctggattccagggtctgcctggacctcaaggatctactggagaa cctggcaagcccggagagcagggtatgcccggtgaggctggacccagcggtccttctgga gcaagaggagacagaggcttccctggagagcgtggggccaatggcccgactggacctgct ggtgctcgcggtgctcctggtagcccaggtgccgatggtgctaagggtgaggctggcgct gctggagtccctggaagccagggacccacaggaatgcagggaatgcccggagagcgtggt gctggcggtatgcccggactcaggggagagaggggagagcctggtgtcaagggacctgat ggtgccgcaggaaaagatggtcatcgtggtctgactggtcctattggacctagtggacct tccggtgctcctggtgagaagggtgagggtggccctgtcggacccgccggtgtatctggt gctcgtggtgcccctggagagcgtggtgagggtggtgcccctggacctgctggattcgct ggaccccctggcatggatggacaggctggtgccaagggagataagggagacaccggaccc aagggagatgctggtgcccccggacccgctggacctcttggagctcccggacctcagggt cctgctggtgccactggatccaagggagcccgtggtggtgctggacctcctggtgctact ggattcccaggtgctgctggcagagttggacctcccggcccctccggcgcaggtggacct cctggccccaccggaccttcaggaaaagagggacagagaggtgctcgtggtgagaaggga ccagctggccgtccaggtgaggtcggtgctgccggacccccaggaccttccggagagaag ggctcccctggtaacgatggagctcctggccctatgggaatctcaggacctcagggtatc gccggaggccgtggtatcgttggtatgcctggacagagaggagagagaggattccctggt ctccccggcccaggaggtgagcctggcaagcagggatctggtggcccagttggagagaga ggacccccaggacctcttggtccccctggactgactggtccccctggtgaagccggccgt gacggatctcaaggtcatgatggtgcccctggtcgtgatggacctgctggttccaaggga gaccgtggtgagactggtaacgctggctcccccggcggtcctggtgctcccggacccccc ggctccgtcggcccctctggaaagactggcgatcgcggagaggctggtcctgctggtaat gttggtcctgctggaccttctggtccccgtggagcacctggcccagctggtgccagaggc gataagggtgaggccggcgaggctggagacagaggcatgaagggacacagaggattcagc ggaatggctggacttcctggacctcccggtcctcctggagagcaaggacctgctggagcc accggccctggtggacccagaggaccccatggaagcaatggtagcccaggaaaggatggc atgaacggtctgcccggacccgttggacccccaggacctcgcggtcgcaatggagagatg ggacccgctggtccacctggacctcccggacccccaggacccgctggcgctcccggcgct ggcatggacttcttccctcagccccagcaggagaagggccctgaccccatgagaggaggc tacagagccgatgacgccagcgtggtgcgcgaccgtgaccaggacgttgacaccaccctc aagagcctgagccagaagatcgagaacatccgcagccccgagggtacccagaagagccct gcccgcatgtgccgcgacctcaggatgtgccaccccgagtggaagagcggcttctactac gtcgaccccaaccagggctctcctcttgatgccgtcaaggtcttctgcaacatggagact ggagagacctgcgtctccccatcccaggccagcgttcctcagaagaactggtacactagc aagaacaaggacaagaagcacgtctggttcagcgagtccatgaccgagggcttccagttc cagtatggcaccgatggatctgatccagaggatgtcaacatccagctgaccttcatgcgc ttgatgtccaacgaggcatcccagaacctcacctaccactgcaagaacagcatcgcctac atggaccaggcctctggcaacctgaagaaggctctgctgctgcagggatccaacgacatc gagatcagagccgagggcaacagccgcttcacctacagcgtcagcgaggatggctgcacg tcacacactggcacatggggcaagacagtcatcgactacagaacaacgaaaacatctcgc ctgcctatcattgacatcgctcctatggacgttggtgctccagatcaggaattcggtgtg gaagttggcccagtatgcttcttgtaa

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