Alosa sapidissima (American shad): 121699664
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Entry
121699664 CDS
T11137
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4 isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121699664 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asad03400
]
121699664 (si:ch211-141o9.10)
Enzymes [BR:
asad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
121699664 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
121699664 (si:ch211-141o9.10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AP_endonuc_2
V-SNARE_C
Motif
Other DBs
NCBI-GeneID:
121699664
NCBI-ProteinID:
XP_041937915
LinkDB
All DBs
Position
24:complement(9864436..9869884)
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AA seq
332 aa
AA seq
DB search
MASTEMGPKKRGERKRKAETETNTERPDESGGGEPLEHCSKGNTRAREGRNKYIGAHVSI
SGGIWKAVEASVEMKGRSFALFLGSQRSWKRPPLDSAAAVRFQEACSTHGFNPNHILPHG
SYLMNCGSPKQDVFEKSQAMLVDELSRCSALGLTQFNLHPGASMGASTEQCLDRIAQAIN
HAHQQIPSVITVLENMSGQGSTIGGQFSELKGIIDRVRDQSRVGVCLDTCHAFAAGYDIS
VSGGVKVMLEEFDKLVGLQYLRAFHLNDSKGKLGCHLDRHEDIGRGQIGLQAFREIVNEP
LLDNIPLILETPGRPGFEYAEQIELLYSLCEG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacagagatgggaccgaaaaagagaggggagaggaaaagaaaggcagagacg
gagaccaacacagagaggccagatgaatcaggtggaggtgagcccttggagcactgtagc
aaaggaaacacgagagcgagagaaggaaggaacaagtacattggagcgcacgtttcgata
tcaggaggtatatggaaagctgtggaagccagtgtggaaatgaagggccgcagttttgcc
ctgttcctgggatctcagcgctcctggaaaagacccccgctggacagtgcagcagcagtc
agatttcaggaggcatgcagtacccatggcttcaacccaaaccacatcctgccacatggg
tcctatctgatgaactgtggctcacccaagcaagatgtgtttgagaagagccaggccatg
ctggtggatgagctgagcagatgcagtgctctgggactcactcagtttaacctgcaccca
ggggcctccatgggagccagcacggagcagtgcttggacaggatcgcacaggccataaac
cacgctcaccaacaaatcccttctgtcatcacagtgctggagaatatgagtggtcagggc
agcaccattggaggtcagttcagtgagctgaagggtataattgaccgggtacgcgatcag
tcacgggttggggtgtgcttggacacatgccatgcttttgcagcaggatatgacatatcg
gtgtctggtggggtgaaggtcatgttggaggagtttgacaagttggtgggactgcagtac
ctccgagctttccatctcaatgactccaaaggtaaactgggttgtcatcttgaccggcat
gaagatatcgggcgtggccagataggccttcaagcattccgcgagatagtgaatgagcct
ctgctggacaacattcctttgatcctggagacccctggacgacctgggtttgagtatgct
gagcagattgagctgttgtactccctttgtgagggctaa
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