Alosa sapidissima (American shad): 121699762
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Entry
121699762 CDS
T11137
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
121699762
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121699762
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
121699762
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GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
121699762
NCBI-ProteinID:
XP_041938081
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Position
24:15069493..15172051
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AA seq
1298 aa
AA seq
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MLVLEDGNRSVGTGNSIMTNYKSGNFKPGTSSIHMSKMDVIIPYSPDVPCDNGQRMWWAF
LASSMVTFFGGLFIILLWRTLKYLWTVCCHCNVKKKDVQRVSNPTVVVGADGVVKTDDKD
AVVAASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSSDEIESCQN
FTQDLTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSW
LGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPW
ENFQNSQSLSYWECVYLLMVTMSTVGYGDVCAKTTLGRLFMVFFILGGLAMFASYVPEII
ELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISP
NLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMR
VISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGL
STMLANLFSMRSFIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGFSFPEVCELCYVKLKL
LLIAIEYKSDIRESSTLINPGNHVKMEEGTLGFFIASDAKEVKRALYYCKACHDDITDPK
RIKKCGCKRTKMSVYKRMKLACFDCGRSEHDCACMSGSVRSNVDTHRQGYALSPLSVNDC
TATLRSSKSNYNGYIKSMDEEPQSALSPKKKQRNGGMRNSPNTSPKVIRHDPLLIPGHDQ
METMDVNVKKYDSTGMFHWCPSKDIEKVMLTRSEAAMTVLSGHVVVCIFGDVKSALVGLR
NLVMPLRASNFHYHELKPIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNIN
LCDMCVILSANQNNIDDASLQDKECILASLNIKSMLFDDSIGVLQANSQGFTPPGMDRSS
PENSPVHGLVRQPSITTGANIPIITELAKPGKTLPLVSFSQDKSSGNNIPMITELVNDSN
VQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATP
ELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALNDGPFAELGDGGCYGDLFCKALKTY
NMLCFGIYRLRDAHITSPTQCTKRYVITNPPYEFELVPSDLIFCLMQFDHNAGQSRSSLS
HSSHSSHTSSKKSSSVHSIPASARPPGRSKGRDPRDKQNATRTSRRVQEKTWFTDEPENA
FPRNIQIKPMNTHMANQVNQYKPTGNPIPTIREVEDEC
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgttagttcttgaggatggcaaccgttctgttggcactggcaatagtataatgactaat
tataaaagtggcaattttaagccggggacgtcctctatccatatgtccaagatggacgtg
atcatcccgtattcgcccgacgtgccctgcgataatggtcagcgcatgtggtgggcattc
cttgcttcgtccatggtcactttctttggaggtttattcatcatacttttatggcgaact
ctgaaatacctgtggactgtgtgttgccactgtaacgtcaaaaagaaggatgttcagaga
gtcagcaaccccacagttgtcgtcggtgcagacggcgtggtcaagaccgatgacaaggac
gccgtggtggctgccagcgaggtgggctggatgacctcagtcaaagactgggcaggggtc
atgatctcagcacagacgctcaccggacgagtcctggtggtgctggtgtttgcgctcagc
attggggccctggtgatctacttcatcgactcctcagatgagatagagtcctgccagaac
ttcacccaggacctgacgttacagatcgacatggcttttaacgtcttcttcctgttgtac
ttcggcctgcggttcatcgcagccaatgacaagctgtggttctggctggaggtcaactcc
gtggtggacttcttcaccgtgccgcctgtgttcgtctctgtgtacctcaacaggagctgg
ctggggttaaggttcttaagagccttaaggttgatacagttctcagaaattttacagttt
ttgaatattttaaaaactagcaattccataaaacttgtgaacttgtgctcaatcttcata
agcacatggcttactgcagctggattcatccacttggtggaaaactcaggggacccttgg
gaaaacttccaaaattcccaatccctttcgtactgggaatgtgtctacttactcatggtc
accatgtccacagtgggatatggagatgtttgtgcaaaaacaacccttgggcgccttttc
atggtcttcttcatcctcggtggattggccatgtttgccagctacgtccctgaaatcata
gagttaataggaaaccgcaagaaatatggtggttcctatagtgctgtaaatggtcgaaag
catatcgtggtgtgtggtcatataacgcttgaaagtgtgtccaacttcttaaaagacttt
cttcacaaggacagggatgatgtcaatgtagaaattgtttttcttcataatatttcccct
aatcttgagctggaagccttattcaaacgccatttcacccaggtggaattttaccaaggg
tctgtccttaaccctcatgatcttgcaagagtgaagattgaatcggccgatgcctgtttg
atcttagctaacaaatactgtgcagaccctgatgcagaggatgcctccaacataatgaga
gtgatatccatcaagaattaccaccctaagatccgcatcataacacagatgttgcagtac
cacaataaggcccatctcctgaacatcccgagctggaactggaaggagggagacgacgcc
atctgcctggccgagctcaaactcggcttcatcgcccagagctgcctggcacagggcctc
tccaccatgctggccaacctcttctccatgaggtcattcatcaagattgaagaggacaca
tggcagaagtactacttggagggggtggccaatgaaatgtacacagagtatctttctagt
gcctttgtgggtttttccttccctgaggtttgtgagttgtgctatgtgaagctgaagctg
ttgttaatagccatagaatacaagtcagatatacgagaaagcagcacgctcatcaaccct
gggaaccatgtgaagatggaggagggaacgttaggcttcttcatagccagtgatgctaaa
gaagtgaagagggcactgtattactgcaaagcttgccacgacgacatcacagatccgaaa
cggatcaaaaagtgtgggtgcaaaagaaccaagatgtccgtctacaagagaatgaaactg
gcatgttttgattgcggccgctctgagcatgactgcgcgtgcatgtcaggcagtgtgcgt
agtaacgtggatactcaccgacaaggctacgcgctctcccccctgtctgttaatgattgc
acagccactttgcgctcctctaaaagtaactataatggatatatcaaatcaatggatgag
gagccacagtctgctctgtcacccaagaagaaacagcgcaatggtggcatgaggaactct
cctaacacctcacctaaagtgatcagacatgatcctctcctcatccctggccacgaccag
atggagaccatggacgtcaacgtcaagaaatatgactcaacaggcatgttccactggtgt
ccatccaaagacatcgagaaggtcatgctgacccggagtgaggcggccatgacagtcctc
agtggtcacgtggtggtctgcatcttcggggacgtgaagtcggcactggtgggactccgg
aacttggtgatgcccctgcgggccagcaacttccactaccacgaactcaagcccatcgtg
ttcgtgggctcgctggagtacctgaagagggagtgggagaccctccacaacttccctaaa
gtctccatcttacccggcacacctttgagccgtgctgacctgagagctgtcaacatcaac
ctgtgcgacatgtgcgtcatcctgtcggccaatcagaacaatatcgacgacgcctcgctg
caggacaaggagtgcatcctggcttcgctcaacatcaagtccatgctgtttgacgacagc
atcggggtcttgcaggccaactcccaagggttcactccacctggcatggacaggtcttct
ccagaaaacagcccagtccacgggctggtgaggcaaccgtccatcaccaccggagccaac
atccccatcatcacagagctggctaagccaggcaaaacactgcccttggtctcattcagt
caggataagagcagtgggaacaacatcccaatgattactgagctggtcaacgactccaac
gttcagttcttggaccaagacgacgatgatgacccagacacagagttgtatctcacacag
ccctttgcctgcgggacggctttcgcagtcagcgtgctagactccctcatgagtgcgacg
tacttcaacgacaacatcctgaccctgatccggacgctggtgaccggcggcgccacgccc
gagctggagggactcctggctgaggagaacgcgctgcgtggcggctacagcacgccacag
accctcgccaaccgggaccgctgccgtgtggcacagctggcacttaacgacgggcccttc
gccgagctgggggatggaggttgctatggtgatttattctgcaaggcacttaaaacatac
aacatgctatgttttgggatttaccgcctaagagatgcacatataacttcacccacccag
tgtaccaagcggtatgtgatcactaacccgccatacgagtttgagctggtgccgtcggac
ctgatcttctgcctgatgcagtttgaccacaacgcgggccagtcgcggagcagcctctcg
cactcctcgcactcgtcccacacgtccagcaagaagagctcgtccgtgcactccatccct
gcctccgcgcgcccccctggacgcagcaaaggccgcgacccgcgggacaagcagaatgct
acaaggacgagtagaagggtccaagaaaagacatggtttacagatgaacccgagaatgcc
ttcccccggaacattcagatcaaacccatgaacacgcacatggccaatcaagtcaatcag
tacaaaccgacaggcaaccccatcccgaccatccgagaagtggaggacgaatgctga
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