Alosa sapidissima (American shad): 121699963
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Entry
121699963 CDS
T11137
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121699963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121699963
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121699963
Spliceosome [BR:
asad03041
]
Complex C
Other components
Step II factors
121699963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
nSTAND3
T2SSE
AAA_19
PhoH
AAA_16
RSRP
nSTAND_NTPase5
Cas3-like_C_2
ABC_tran
Flavi_DEAD
TsaE
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
121699963
NCBI-ProteinID:
XP_041938469
LinkDB
All DBs
Position
24:8985988..8997717
Genome browser
AA seq
1180 aa
AA seq
DB search
MAENKLVELQRLEYLSMVSKVCTELDNHLGLNDKDLAEFIISLAEKHPTFDCFKAALLKN
GADFTDSLVTNLLRLIQTMHPSATPSTSKASENSGNPKGDGDKRREMFPGLCLPDNPSAR
TMLDDAKVAADAMKELEMFMPSIQETPSTVKPENEGGARKRSRSRSRERDHRRRSRSRSR
SRSRSRSPKVERKRVRKSRWDMDSDAWRERDRHVDRPPPEEPVAGDIYNGKISSIMQFGC
FVHLEGLRKRFEGLVHVSELRKEGRVANVADVVSKGQKVKVKVLSFTGTKTSLSMKDVDQ
ETGEDLNPNRRKNLLGEGTEDAMRNPDRPVDLNLTQVPELEEDTMERKRLTKITDLEKWE
IKQMIAANVLSKEDYPEFDEETGILPRIDDEEDENLDVELVEEEPPFLRGRTKFTMNLSP
VKIVKNPDGSLSQAAMMQSALSKERREVKQQAREAEMDCIPLGLNKHWIDPMPDMEGRQI
AQNMRGIGIMPDIDVPEWKRYAFGGNTVSYGKKTQMTIIEQRESLPIFKLKEQLLQAIHD
NQILIVIGETGSGKTTQMTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQ
EVGYTMRFEDCTSTETVIKYMTDGMLLREFLIDPALSQYCVMMLDEAHERNIYIDILFGL
LKKTVQNRKDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYCKEPETDYLDAS
LITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEM
QTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTGIDQLVVTPIS
QAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTMLSLKAMGINDL
LSFDFMDAPPMETLVTAMEQLYTLGALDDEGLLTRLGRRMAEFPLAPMLCKMLIMSVHLG
CSEEMLTIVSMLSVQNVFYRPKDKQMQADQKKAKFHQPEGDHLTLLSVYNSWKNNKFSNP
WCFENFIQARSLRRAQDIRKQMLGIMDRHKLDMVSCGKATVRVQKAICSGFFRNAAKKDP
QEGYRTLIDQQVVYIHPASALFNRQPEWLVYHELVLTTKEYMREITTIDPRWLVEFAPAF
FKVSDPTRLSKQKKMQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacaagctagtggagctacaaaggctcgagtacttgtctatggtgtctaaa
gtttgcacagaactcgataaccatttaggattaaacgacaaagatctagctgagtttatc
atcagtctggctgaaaaacatccgacatttgattgtttcaaagcagctctgctcaaaaat
ggagcagacttcacagactcacttgtcaccaatttgctgcgtctcattcagacaatgcac
ccatcagctactccatccaccagcaaagcctcagagaactcgggaaatccaaaaggcgac
ggcgacaagcgtagggagatgttccctggtctctgtttaccagacaatccatccgcaagg
actatgcttgatgatgccaaggtggctgcagatgctatgaaggagctggagatgttcatg
cccagtattcaagaaacaccaagtacagtcaagcccgaaaatgaaggtggagccagaaag
aggagtcgcagtcgaagcagagagcgggaccacaggagacggtcccgctcccgctcccgg
tcccgctcccggtctcgctcaccaaaagtggagcggaagagggtgcgtaagtcccgctgg
gacatggacagcgatgcctggagggagagggacaggcacgtggaccggccgcccccagag
gagccagtggctggagacatctacaacggcaaaatcagcagcatcatgcagtttggttgc
tttgtgcacttggagggtctgagaaaacgttttgaaggcttggtgcatgtctcagaatta
cgcaaagaaggaagagtggccaacgtggcggatgtggtcagcaaaggtcaaaaggtcaaa
gtcaaagtgttgtccttcacagggaccaaaaccagtctcagtatgaaggatgtggaccag
gaaactggtgaggacctgaacccaaaccgcaggaagaatcttttaggagagggcacagag
gatgccatgaggaaccctgaccgaccagtggacctaaacttgacccaggtacccgagctg
gaggaagacactatggagcgcaagaggctgaccaagataactgacctggagaagtgggag
atcaaacagatgattgctgctaatgttttatctaaagaggactaccctgagtttgatgag
gaaacaggcattctaccaagaatagacgatgaagaagatgagaatttagatgtggagctg
gttgaagaggagccccccttcctcagaggacgcactaaattcaccatgaacttgagtcct
gtcaagatagtcaagaacccggacggctctctgtcccaggccgccatgatgcagagcgcc
ctgtccaaggagcggagggaggtgaagcagcaggcacgcgaggccgagatggactgtatc
cctctgggcctcaacaagcactggatcgaccctatgcctgatatggagggcaggcagatc
gcccagaacatgaggggcattggcatcatgcccgacatagacgtgccggagtggaagcgc
tacgccttcggcggcaacacggtctcgtacgggaagaagacccagatgaccatcatcgag
cagcgagagagcctgcccatcttcaagctaaaggaacagctgcttcaggctatccatgat
aaccagatcctgattgtaattggtgagacgggctcagggaagaccacccagatgacccag
tacctggctgaggccggctacaccaccaggggcaagatcggctgcacccagcccagaaga
gtggcagccatgtctgtggccaagagggtgtccgaggagtacggttgctgtctgggacag
gaggtgggatacaccatgcgttttgaggactgcaccagcactgagacggtcatcaagtac
atgaccgatggtatgctgctccgagagttcctcatcgatcctgcgctctcacagtactgc
gtcatgatgctggacgaggcccacgaaaggaacatctacatcgacattctcttcggcctc
cttaaaaagactgtgcaaaatcgcaaagacatgaagctgatcgtcacctctgccacgctg
gacgctgtaaagttctctcagtatttctacgaggcgcccatcttcaccattcccggccgc
acataccctgtggaggtgctctactgcaaagagcctgagacggactacctggatgccagt
ctgatcacagtcatgcagatccacctgactgaacccccaggtgatgtcctggtgttcctg
acgggtcaggaggagatcgacacggcctgtgagattctgtacgagcgcatgaagtctctg
ggtccagatgttcctgagctcatcatcctcccggtgtactcggctctgcccagcgagatg
cagaccaggatctttgacccagcaccccctggcagcagaaaggtggttattgccactaac
atcgcagagacatccctcaccattgatggcatctattatgtagtggacccaggctttgtc
aagcaaaacgtctacaactctaaaactggcattgaccagctggtggtgacgcctatctca
caggcccaggctaagcagcgtgcaggcagagctggtagaacaggccctggtaaatgctac
aggctgtacacagagagagcctacagagacgagatgctgaccaccaacgtgcccgagatc
cagagaaccaacttggccagcactatgctgtcacttaaggccatgggtatcaatgacctg
ctgtcgtttgacttcatggacgcccctccaatggagaccctggtgactgcgatggagcag
ctctataccctgggagccttggatgatgaggggctgctcacacgtcttggccgcaggatg
gcggagttccccctggcccccatgttgtgtaagatgcttatcatgtcagtgcatctgggc
tgcagcgaggagatgttgaccattgtgtccatgctgtctgtgcagaatgtcttctacaga
ccaaaggataagcaaatgcaagcagatcagaagaaagccaagtttcaccagccagaagga
gatcaccttactctgctgtcagtctacaactcctggaagaacaacaaattctccaacccc
tggtgtttcgagaacttcatccaggccagatcgctgcgccgcgcacaggatatccgcaaa
cagatgctgggcatcatggaccgacataagttagacatggtgtcttgtgggaaggccact
gttcgtgtgcagaaagccatctgcagtggtttcttccgtaatgctgccaagaaagaccca
caggagggctaccggacgctcatcgaccagcaggtggtctacatccatcctgccagcgcc
ctcttcaacagacaaccagagtggttggtgtaccacgagctggtgttgaccactaaggaa
tacatgcgcgagataacaactattgacccacgctggctggtggagttcgcgccggctttc
ttcaaagtgtccgaccccacgcgcctcagcaagcagaagaagatgcagcgactggagcca
ctgtacaaccgctacgaggagcccaacgcctggagaatttccagagccttccgcagacga
tag
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