Alosa sapidissima (American shad): 121700273
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Entry
121700273 CDS
T11137
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121700273 (scn1laa)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121700273 (scn1laa)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Spem1
Motif
Other DBs
NCBI-GeneID:
121700273
NCBI-ProteinID:
XP_041939088
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All DBs
Position
2:26260413..26304906
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AA seq
1981 aa
AA seq
DB search
MAQMLLPPGPDSFRPFGRESLRAIENRIREEAQNKPKDKRAKDDENVPKPNGDLEAGKIL
PFIYGDVPCELVSSPLEDMDTYYNNKKTFIVLNKGKTIFRFSATRALYILSPFNPIRRIA
IKVLVHRWFSMLIMCTILTNCGFMTQSSNPKPVEYTFTGIYTFESLIKILARGFCMEPFT
FLRDPWNWLDFCVIVMAYVTFFLEGYVDLGNLTPLRTFRVLRALKSISVVPGLKTIVGAL
IQSVKKLADVMILTVFCLSVFALIGLQLFMGNLKHKCVRMQYPSNRNASMSLILNSTNYS
SDPNNHYFIQGQRDALLCGNGSGAGVCPDGYLCYKTGKNPDYGYTSFDSFGWAFLSLFRL
MTQDYWERLYQQTLRAAGKPYMMFFILVIFLGSFYLVNLILAVVAMAYDEQNQATIEEAQ
QKEMEFQAMLEQLKDSMVKTKIISDIVENEALSESSSNVSRLSSKSAKELRNHRKRRKDG
ERGDSVRSHNSESEDSIRRPSLRFLDGKHRLSNKEHPSSPHQSILSFHGSILSPRRNSRS
SVFSYRGGALDETGFADDEHSPFDKGSRRGSLFLPCRPRFRHVSENSVSSHILRTASSKI
QSSVNHNGIGSQVSGGSLPSSPAHLRLPVVMIDAPTPCDDGSPGSGSFRRVRYGSNSADF
LDDVSIRQRALSVASIITTVEELEESRQKCHPCWFELARTLLIWDCPSWVKIKKVVYLIV
MDPFADLAITICIVLNTVFMSMEQHPGSPTLTSVLYVGNLVFTAIFTGEMILKIIAMDPY
YYFQESWNIFDSVIVILSLIELGLAKLSGMSVLRSFRLLRIFKLAKSWPTLNMLIKIIGN
SVGALGNLTLVLAIIVFIFAVVGMQLFGSSYEQNSCKITEKCQDDCSKDCLLPRWHMHDF
PHSFLVVFRVLCGEWIETMWDCMEVHEGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFS
ADNLTAIEDDNETNNIQIAMARIHRGIAWVKLTVRRSFRSLCMRKKKQKKPVSMVKSGDD
HANNGMDNGIYFPNHSTVEFIKDLDCLKERNGVAAGLEDTAKNYIMSNEDVYLPFVSNSD
VTVSVPIAAGESDFENLNTEDFSSLSSDIEDDIKEKLEDNGDCSSSEGSTVDIRLNCGES
MDLELEESMDPEPCFTTGCVQRFPCCRVDIEKGIWKSWWTLRKTCFRIVEHNWFETFIIF
MIMLSSGALAFEDVELVNRPKIKVILEYADKVFTYIFILEMLLKWVAYGFAKYFTNYWCW
LDFVIVDISIISMVANALNCNQGAIKSLRTLRSLRPLRAMSRFEGMRVVVNALLGAIPSI
FNVLLVCLIFWLIFSIMGVNFFAGKYHYCANSTNGERFNASEVANQTECNKTEGARWKNV
KINFDNVASGYLALLQVATFKGWMPIMYAAVDSRQLNDQPIYEDKMVAYIYFVVFIIFGS
FFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKIQ
GFVFDLITKQGFDILIMVLIFLNMVTMMIETDEQSIEKENILYNINLVFIVLFTSECVLK
MIALRHHYFTVSWNVFDFIVVILSVVGMFLADLIEKYFFSPTLFRVIRLARIGRILRLVK
SAKGIRTLLFALMMSLPALFNIGILLFLVMFIYSILGMSFFAYIKKEDGIDDMFNFETFG
NSMICLFQITTSAGWDLLLSPILNVEPDCNKTKENPGSRNKGDCGNPAVGIAFFVSYIII
CFLIVVNMYIAVILENFSVATEESAEPLGEDDFEMFYEVWEKFDPKATQFINYDKLSDFA
NALNPPLRMPKPNAVALINMDLPMVSGERIHCLDILFAFTKRVLGEGGELDVLRGQMEER
FMASNPSKVSYEPISSTLRRKQEFMSAILIQRAFRRYLIRRTVKQGSSIFNYSESDEENP
PDKGSTDKLNENTLSAQGSDKSPSTLSPQSSNSVRGPGKEKYEKDKREKEVKCKDNEQGR
K
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggcacagatgctgctgccacccggaccagacagcttccgtccgttcggccgcgagtcg
ctcagggccatcgagaatcgcatccgcgaggaggcccaaaacaagccaaaggacaagcgg
gccaaagatgacgagaacgtcccgaaacccaatggcgacctggaggcggggaaaatcctg
cccttcatatatggggacgtgccctgtgaactggtgtccagccctctggaggacatggac
acttattacaacaacaaaaaaacctttatagtgttgaacaaagggaagacaatctttcgc
ttcagtgcgacacgtgctttgtatattttaagccccttcaatcccattagaagaattgct
attaaagttttggtgcatcgatggtttagcatgttgatcatgtgcacaatcttaaccaac
tgtgggtttatgacacagtcttcgaatccaaaacctgtggagtacacattcaccggaata
tatacttttgaatccctcattaaaattcttgcaaggggcttttgtatggagccgtttacc
tttctaagggatccatggaattggttggacttctgtgttattgtcatggcatatgtcaca
ttttttctggaggggtatgtggacctgggcaatctgactccactaagaacattcagggtg
ctacgggccctcaaatctatatcagtcgttccaggtctgaagactattgtaggagcactc
atacagtcagtgaagaagctggctgacgtcatgattctcaccgtcttctgcttaagtgtc
tttgctctgatcgggctgcagctcttcatgggcaatctaaagcacaaatgtgtgagaatg
caatacccctccaacagaaatgcatcaatgagtctcatacttaactcaactaactatagc
tcggacccaaataaccactactttatccaaggccaaagagatgccttgctgtgcgggaat
ggcagtggagctggagtatgcccagacggatatttgtgctataaaacgggcaagaaccca
gattacgggtacacaagcttcgactcgtttggctgggccttcctgtctttgttcaggctg
atgacccaggactactgggagcgactctaccagcagactctcagggcagcaggaaagccc
tacatgatgttcttcatcctggtcatcttcttggggtccttctacctggtaaatctgatc
ctggctgtggtggccatggcctatgatgaacagaaccaggccaccatagaggaggcccag
cagaaggagatggagttccaagctatgttggagcagttgaaggacagcatggttaagacc
aaaataataagtgacatagtagagaacgaggccctgtcggagtcatcttccaacgtctcg
agactcagctccaaaagtgccaaggagctcagaaaccacagaaaacgcagaaaagatggg
gagaggggtgacagtgtgcggtcacacaattccgagtcagaggacagcatcagaaggccc
tctcttcgtttcctggacggcaaacatcgcctttccaataaggagcatccttcatcccca
catcagtcgatccttagtttccatgggtccattttgtcacccagacggaacagcaggagt
agtgtcttcagttaccgtggcggggcattggacgaaactggtttcgctgatgacgagcac
agcccctttgacaagggcagccggcgtggctccttattcctgccgtgcaggccccgcttt
aggcacgtcagtgagaacagcgtctcctcccatatcctccggacagccagcagcaagatc
cagagctccgtgaaccacaatgggatagggtcccaggtttccgggggctcactaccctcg
tcacctgctcaccttcggttgcctgtggtgatgatagatgcccccaccccttgtgatgac
ggttctcctggcagtggttccttcaggagggtccgatatggttctaactcggcagacttt
ttagatgacgtgtccataaggcaaagagccctgagtgtggccagtataatcaccacagtg
gaagaacttgaagagtcaagacagaagtgccatccatgttggtttgagcttgccagaact
cttctgatctgggactgtccctcatgggtgaaaatcaagaaagttgtctaccttattgtg
atggacccttttgctgatctagccatcactatctgtatagtcttaaatacagtgtttatg
tcaatggagcagcacccagggtcacccacgttaacaagtgttctctatgtagggaatctg
gtatttacagcaatcttcactggtgagatgattttgaagattatagctatggacccatac
tattatttccaagagagctggaatatatttgacagtgttattgtcatcttgagcttgata
gaacttgggctggcaaaactatcagggatgtctgttctcagatctttcagattgttgagg
atcttcaaactagctaagtcatggcccactctgaacatgctgatcaagatcatagggaac
tcagttggcgccctgggaaacctcaccttggtgctggccattattgtcttcatatttgct
gtggttggcatgcagctatttggctcgagctacgaacagaatagttgcaagataacggag
aagtgtcaagatgactgttctaaggattgtttgctgccacgctggcacatgcacgacttt
ccccattccttcctggttgtgttccgagtgttgtgtggcgagtggattgagaccatgtgg
gactgcatggaggtccatgaaggccaggccatgtgtctcactgtcttcatgatggtcatg
gtcatcggaaatttggtggtcctcaacctctttcttgcgctgctgctcagctctttcagt
gctgacaacctgacggctatagaagacgataacgagacaaataacattcagatagccatg
gctcggattcataggggcattgcttgggtgaagctcacagtgcgtcgctcttttcggagc
ctttgcatgagaaaaaagaagcaaaagaagcccgtgagcatggtcaagtcaggggacgac
cacgccaacaatggaatggacaatggaatctattttcccaaccacagcactgtagagttc
atcaaagacctggactgtttgaaggagcggaacggagtagctgcagggttggaggacact
gcaaagaactacatcatgtccaacgaggatgtgtatttgcctttcgtcagtaattctgac
gtgactgtctcagtccccattgctgcaggggaatctgactttgagaacctcaacacagaa
gacttcagcagcctgtcctctgacatagaggatgacatcaaagagaagctggaggacaat
ggcgattgtagctcttcagagggtagcacagtagacatcagactcaactgtggagagtct
atggacctggagctggaggagtccatggaccctgaaccatgctttacaacaggttgtgtc
cagagattcccctgctgtcgtgttgatatagagaaaggtatctggaagtcgtggtggacc
ctgagaaagacatgcttcagaatcgtggagcataactggtttgagaccttcatcatcttc
atgatcatgctcagcagtggtgcacttgcttttgaagacgtcgaacttgttaataggcca
aagataaaggttatcctggaatatgctgataaagtattcacctatatattcatcttggag
atgctgttaaagtgggtggcctatggatttgccaaatacttcaccaactactggtgctgg
ctggactttgttattgttgatatctctataatcagcatggtggccaatgctttgaactgc
aatcaaggtgcaattaaatccctgaggacactgaggtctctaagacccctcagagctatg
tcacgcttcgagggcatgcgggtggtggtgaatgccctgctgggagccattccttctatc
ttcaatgtcctgctggtctgcctcatcttctggctaatttttagcatcatgggagtcaat
ttctttgccggaaagtaccactattgtgccaatagtaccaatggagaacgctttaatgca
agtgaagttgcaaaccagacagagtgcaataaaacagaaggggctcgttggaagaatgtc
aaaattaactttgacaatgtggcgtcaggctacttggcgttattgcaagtggcaacattt
aagggctggatgccaatcatgtacgctgctgtagactcacgtcaactaaatgaccagcct
atctacgaagacaaaatggttgcgtacatctactttgtcgttttcatcatcttcggttca
ttcttcaccctcaatctcttcattggtgtcattattgacaacttcaatcaacagaagaaa
aagtttggaggtcaggatatcttcatgactgaagagcaaaagaagtattacaatgccatg
aaaaagcttggatccaagaagccccagaagcctattcctaggccatcaaacaaaatacaa
ggatttgtctttgaccttataaccaagcagggctttgatattttgatcatggttcttata
ttccttaatatggtaaccatgatgattgagacggatgaacaatccattgagaaagagaac
atcctttacaatatcaatttggtgttcattgtgctgttcacctcagaatgtgtattaaag
atgattgcacttcgccatcactatttcactgtcagctggaatgtatttgacttcattgtc
gtcatcctttcagtagttggtatgtttctagcagacctgatagaaaagtatttcttctcg
ccaaccctgtttagagtgattcgtcttgcgagaattgggcgcatcctacgcctcgtcaaa
agtgccaagggaattcgcactcttctgtttgctctgatgatgtcattgccggccctgttt
aatattggcatcctcctcttcttggtgatgttcatctactccatcctcggcatgtccttc
tttgcctacataaagaaggaggatggcatagacgacatgttcaacttcgagacgttcggc
aacagcatgatctgcctgttccagatcaccacctcggctggttgggacctcctcctgtcg
cccatactcaacgtcgagccagactgcaacaagacgaaagaaaaccccggcagtcgcaac
aagggcgactgtggcaacccggcagtgggcatcgccttcttcgtctcgtacatcatcatc
tgcttcctgatcgtggtcaatatgtacattgccgtcatcctggagaacttcagcgtggcc
acggaggagagtgccgagccgttgggcgaggacgactttgagatgttctacgaagtgtgg
gagaagtttgaccccaaggccacgcagttcatcaactacgacaagctgtcggacttcgcc
aacgcgctgaacccgccactgcgcatgcccaagcccaacgcggtggcgctgatcaacatg
gacctgcccatggtgagtggcgagcgcatccactgcctggacatcctgtttgccttcacc
aagcgcgtgctgggcgagggtggtgagctggacgtcctgcgcggccagatggaggaacgt
ttcatggcctcgaacccctcaaaggtttcttacgagcccatctcctccacactgcgccgc
aagcaggagttcatgtcggccatcctcatccagagagctttccggaggtatctgatccga
aggactgtcaaacagggctccagcatatttaactacagcgagagcgacgaagagaaccct
ccggacaaaggctccacagacaaactgaacgagaacactttgtcggctcagggctcggac
aaaagcccgtccacactgtccccgcagtccagtaatagtgtaagagggccaggaaaggaa
aagtatgaaaaggacaagagggagaaggaagtgaaatgcaaagacaatgaacagggcaga
aaataa
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