Alosa sapidissima (American shad): 121700966
Help
Entry
121700966 CDS
T11137
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asad03400
]
121700966 (pms1)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121700966 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
HMG_WDHD1
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
121700966
NCBI-ProteinID:
XP_041940021
LinkDB
All DBs
Position
2:21850181..21867494
Genome browser
AA seq
919 aa
AA seq
DB search
MKQLPAETVRLLSSSQVITSIVSVVKELIENSLDAGSTSIDVKLENYGLDRIEVRDNGSG
IKAADTAVMAVKHYTSKISSHDDLMQLETYGFRGEALGSICAVSEVVVTTKTAEEDFSTQ
YTLNLTGHIVSQKPSHLGQGTTVCALKLFKNLPVRRQYYSNTKKCKEELKKVQDLLMAYA
VVKPELRITFAHNKVVVWQKSRVSDHRAALMAVIGAALMANMFPLQHRQEHPEISIEGFF
PKPDSDYASASSSNPDRTFVFVNNRPVHHKDIMKLVKQFCSRDPSCRRYPILVMNIMVPS
SAVDVNLTPDKTQVMLQNKEAVLAAVESMLVSLYGPLADAEGSVSCEVTGDGSASGSLAT
HQQLPGNTRNNDADPDAQDVLSHNAAVSPQTPLDCSDVDLFGTIATKTGDPASNTSLNQT
SSSSSSEDWIINKSLFDLSHVNGSLLDDDCLSTGDTKDGGKESADLFAVTPSADCSISAE
SWSRGRGLTDPVTGGCLEPVKLHVPSEPRGVPETIDKCRSSPSKKLSNVIVARMPKPTAY
ELIGSRPVRQPLSARALFERDCRVSILQEDPGAGVQDVTTAVKERWESLGEEDRKKYEEK
AKKAVDVYNLQKLRAEEGQTPARDGKRLQSAVDSPASKPQGLKRKAPLSNQQLLDKLFSS
QPLKKSAPAKVSKPLPFCLAALKRRLNLLSSQSGSGPQGLRLVNRLASHCAWVVLCGREL
MLLNPFRVEEALLFKRLLENNILPAACLQTPIQLTDGVLGGSECMDVLYDMSKGQQELNG
TTYFSDPRLVANGFQIRLSPGLSSTERHMEVASMADCMPFFGIADLREILTAVKDRQAET
VRQCRPMKATRYLEKGEAVRMVRQLPLNQSRDDVENTLSRMREQLGEEAQSCIHGRPFFH
LLSKVPETDEEALVTLSNT
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacttccagcagagacagtccgcttgctgtcaagttctcaagtcattacatct
attgtgagtgtcgtcaaggagctgattgagaactcactggatgcaggttcaacaagcatc
gacgttaaactggaaaattatggactggatcgcattgaggtgagagataatggttcaggg
atcaaagctgctgacacggcagtcatggcagtgaaacactatacctcaaagatctccagc
catgatgacctcatgcagctggagacgtatggattcagaggagaggcgcttggatccata
tgtgctgtgtcagaggttgttgttacaaccaagacagcagaggaggacttcagcacacaa
tatacactgaacctcacagggcatatcgtctcccagaagccatcacatcttggccaaggg
acaaccgtgtgtgctcttaaactgtttaagaacctccccgtgagaagacagtactactca
aacacaaagaaatgcaaagaggagctgaagaaagtccaggatcttctcatggcctatgcc
gtggtcaagcctgagctgagaataaccttcgctcacaacaaggtcgtggtttggcagaag
tccagggtgtcggatcaccgagcggccctcatggctgtgattggagcggctctcatggcc
aacatgttcccactccaacatcgccaggagcatccagagatttcgatcgagggatttttc
ccaaagccagactctgactatgcctcagcaagctccagtaatccggacagaacttttgtc
tttgtaaataaccgtccagttcatcacaaagacattatgaagctggttaagcagttctgt
agtagagatccgtcttgccgtcgctaccctatcctagtgatgaacattatggtcccttca
tccgcggttgatgtcaacctcactcctgacaaaactcaagttatgcttcaaaacaaggaa
gcagtgttggctgctgtagagtccatgttggtttcactctacggtcctttggcagacgct
gaaggctctgtcagctgtgaggtgacaggagatggctcagcctctgggtccttagcaaca
caccagcagcttcctggtaacacacggaataatgatgctgatcctgatgcacaggatgta
ctcagtcacaatgctgcggtctcgcctcaaaccccgttagactgctctgacgtagatttg
ttcggaactatcgcaacaaagacaggtgatccagccagtaacacatctctaaaccagacc
agctcttcatcttcatcagaggactggataatcaataagagcttgtttgacttgagccac
gtcaacggttccttgctagatgacgactgtttaagcacaggggacacaaaagatggtggg
aaggagagtgctgacttgtttgcggtcacacccagtgcagactgcagcatctctgcagag
agctggagcaggggccggggcctgacggatccggtcaccggtggttgtttggagcccgtg
aagctgcacgtcccatccgagccccggggagtcccagaaaccatagacaaatgcaggagt
agcccgtccaagaagctgtcaaatgtcattgtggccagaatgcccaagccaacggcctac
gaactgatcggctcccgccccgtgcgtcagcccctgtctgcccgtgccctgttcgagcgg
gattgcagagtgtccatccttcaggaggacccaggagccggtgtgcaggatgtcaccact
gctgttaaagagagatgggaaagccttggggaggaagacaggaagaagtatgaggagaaa
gccaaaaaggctgtcgacgtatacaacctacaaaaactacgtgccgaagaggggcagacg
ccggctagagatggcaaacggctgcagtcagcagtggactccccggccagcaagccccaa
ggcctgaagcgcaaggctccgctctccaaccagcagctccttgacaaactcttctcctct
cagccgttgaaaaaaagtgccccagcaaaggtctccaagcccctcccgttctgcctagct
gccctcaagcgcaggcttaacctcctgtcgtcccagagtggctccggcccacagggcctc
aggcttgtaaaccgcttggcttctcactgcgcctgggtcgttttatgtggcagggagctc
atgttgttaaatccatttcgggtggaggaggccttgctgtttaaaagacttctggagaat
aatatacttccagcagcgtgcctgcagacccctatacagttaacagatggtgtgctgggt
ggatcagagtgcatggatgtcctctatgacatgagcaaaggacaacaagagctgaacggt
acaacctacttctctgatcccaggcttgtggcaaacggatttcagatcaggctctctcca
ggcttgtcatccaccgagaggcacatggaagtggcaagcatggctgattgcatgcctttc
ttcggcatcgccgacctgagggaaattttgacagcggtgaaggatcgacaggctgaaact
gtgcgtcagtgcagaccgatgaaagccacgcgctatcttgagaagggggaagccgtgcgg
atggtcagacagctgcccttaaatcaatctcgagatgatgtagagaacacactaagtcga
atgcgagaacagcttggagaagaagctcagtcctgcatccatggacggccatttttccat
ctcttgtccaaagtccctgagacggacgaggaggctcttgtgaccctgtccaacacatga
DBGET
integrated database retrieval system
