Alosa sapidissima (American shad): 121703972
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Entry
121703972 CDS
T11137
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asad04147
]
121703972 (col18a1a)
00535 Proteoglycans [BR:
asad00535
]
121703972 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
asad00536
]
121703972 (col18a1a)
Exosome [BR:
asad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121703972 (col18a1a)
Proteoglycans [BR:
asad00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121703972 (col18a1a)
Glycosaminoglycan binding proteins [BR:
asad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121703972 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121703972
NCBI-ProteinID:
XP_041940397
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Position
2:5360259..5437702
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AA seq
1370 aa
AA seq
DB search
MSKLGMCLGLPLLVCLLCVGHSEGWLWWDAGKQDKSTVTPANARPPPPPGTRPETQRRKE
ESGLSLLQLIGNPPPSDIELAYSPDNTVGYVFGPSSNTGQLAHAHLPNPFYRDFSLMFHL
KPTTSRGGVVFAVTDATQQIMYVGVKLSAVQGGRQRIILYYTEPDSTSSYEAASFTVPSM
QDRWTRFALSVNQDRVLLFFNCDTDQQVVNFERSPDDMDMENGAGIFVGQAGGADPDKFL
GVIAELRVVGDPQAAELHCDEDGDDSDAASGDYGSGQGETSSTVSTTPPSLRPIQPPPVT
SPKGDSGDSVHRQTAYDTERHSVDHHSGDRTWGGQAGPSQKGQKGERGDTGPKGESGYGA
GGGSGRAEKGAKGDRGLGSPGPKGDRGPSGPPGPPGPPGPSVVNPGDGSAVQTIPGPRGP
PGPAGSPGPAGADGEPGDPGEDGKAGPVGPRGFPGTPGDPGQKGTKGDRGDGQPGPRGPP
GPPGPPGPGLGGRDRLTYVDLEGSGFPDLESVRGLPGVPGLPGPPGPPGPPGYGGSSGSG
SSGSPGAPGIPGPSGPPGAAGRPGPAGPKGEAGELGLPGAVGEKGSKGDAGTPGIPGQTG
LAGLPGPMGPVGQPGPPGPPGPGYRVGFDDMEGSGVGIYPGGPGVRGPDGVQGPPGLPGL
PGKPGFPGLTGQKGSEGPQGRDGRPGLDGFPGPQGPKGERGDRGERGEPGRDGAGIPGPP
GPPGPPGQIAYSSGGSYDGVGVQGPQGNPGLQGQAGFPGPMGPKGDRGDPGLPGIATKGE
KGEPGAIIGPDGNAIYYAGSGGQKGDMGPPGPVGPAGPYGPQGPKGEIGFPGRPGRPGVN
GYKGEKGDPSSGSGYGYPGAPGPPGPPGPPGPTVSVDRFNRYETDRNYPAEKGEKGDRGD
PGIPGTPASSYDIEYLSGKLKGERGDTGGKGEKGEPGGGYYDPRYGGGQGPQGPPGNPGL
PGPKGDSIRGPPGPQGPSGPPGAGYDGRPGVPGPPGPPGPPGALPGAYRPTISIPGPPGP
AGPPGHPGQSSAVTVQRTYDVIETARRYPEGTLVFDMEKISLYVRVRDGIRQVQLGDYLP
FFTGLDNEVAAAQPPPVIHYPDHGAGSVTRPIEPPPQQPADVPRREPEPDPRYPSHHDPR
YPQNPDYRHPPQSHPRYPEQPDPRQPTQPEIRHPVTPVRRPEPQPARPVDTTGPGLHLIA
LNAPQSGNMRGIRGADFLCFQQARAVGLSGTYRAFLSSKLQDLYSIVRKSDRDTLPIKNL
KGQVLFSSWESLFSEAEGRMKDNAPIYSFDGRDILRDSAWPEKMIWHGSSPRGQRQTDNY
CETWRTGDRAVTGLASSLQSGQLLHQTPHSCSGSYIVLCIENSYISHSKK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaactcgggatgtgtctgggcctccccctgctcgtgtgcctgttgtgcgtgggg
cactcggagggctggctttggtgggatgccgggaagcaggacaaatcgacagtgacaccg
gccaacgcaaggcctccgccaccgccaggaactaggccagagacccagaggagaaaagag
gagagcggactgtctctactgcagcttattgggaaccctcctccatccgacatcgagctg
gcgtacagccccgacaacaccgtcggctacgtgttcggccccagctccaacacgggccag
ctggcccacgcgcacctgcccaaccccttctaccgcgacttctcgctcatgttccacctg
aagcccaccacgtcacgcggcggtgtggtcttcgccgtcaccgacgccacgcagcagatc
atgtacgtgggcgtgaagctgtcggccgtgcaggggggccgccagcggatcatcctctac
tacacggagcccgactccaccagctcgtacgaggcggccagcttcaccgtgccctccatg
caggaccgctggacgcgctttgccctgagcgtcaaccaggacagggtgctgctcttcttc
aactgcgacacggaccagcaggtcgtgaactttgagcgctcgcccgacgacatggacatg
gagaacggcgcgggcatcttcgttgggcaggccggaggggccgacccagataagttcctg
ggtgtgattgccgagctgagggtcgttggagatccccaggctgcagaattgcattgtgat
gaagatggagatgactcagatgcagcctcgggcgattacggaagtggccagggagagacg
agctccacagtctcgactacacctccttccctgcggccgatccagccacctccagtgaca
tcaccaaagggcgattctggcgactctgtccacagacagaccgcctatgacaccgagaga
cactctgtggaccatcactccggagataggacctggggtggtcaagctggaccgagccag
aaggggcagaagggtgagcgaggagacacgggcccgaagggagagagtggctacggtgcc
ggaggagggagcggccgcgcagagaagggtgccaaaggagacaggggtttgggatcgcct
ggtcctaaaggggaccgcggaccttccgggcctcctggacctcctgggcccccaggacct
agtgtcgttaacccaggcgatgggtcagcggtccaaaccattccaggccccagaggacca
cctgggccggccggatcacctggccctgcaggagccgacggtgaacctggtgaccctggt
gaagacggcaaagctgggcccgtgggacctcgtggattcccagggacaccgggagacccc
ggacaaaaaggaaccaagggtgaccgtggtgatgggcagccaggtccccgtggtccacct
ggtccccctggtcctcccggccctggccttggaggccgagacagacttacctacgtggac
ttggagggttctgggttccctgatttggagagtgttcggggcctacctggagtacctggt
ctgcctggcccacctgggcccccaggtcctcctggctatggggggtcttccggatctgga
tcatctgggtcacctggagcccctggtataccgggcccctcaggtcctccgggcgcagca
ggacgaccaggaccagcaggccccaagggagaagctggtgaattgggactccctggagca
gtgggcgaaaagggctccaagggtgacgcaggtactcctggcattcctggccaaactgga
ctcgccgggctcccagggcctatgggacccgttggacaaccaggacctcccggacctcct
gggcccggctaccgcgttggctttgatgatatggagggctctggtgtgggcatctatcct
ggcggaccaggagtgagaggacctgatggagtacagggtccacctggtcttcctggcctt
ccgggcaagccgggcttccctggtctcactggccagaagggcagtgaggggcctcagggc
agagatggtcgaccaggactggacggttttcctggaccacagggaccaaaaggagaaaga
ggagacaggggagaaagaggggagccgggtagagatggggccggtattcctggaccacct
ggccctcctggacccccagggcagattgcctactcatctggtggaagttatgatggtgtg
ggtgtacaaggacctcagggtaatcctggactgcagggtcaagcagggttccctggtcca
atgggaccaaagggtgatcgaggtgacccaggcctgccaggaattgctaccaagggtgaa
aaaggagaacctggcgcaattattgggcctgatggcaatgccatttactatgctgggtcg
ggtggacagaagggagacatgggacctcctggaccagttgggccagctgggccatacggt
ccacaagggccaaagggtgaaatcggtttccctggcagaccaggtcgtcctggtgtcaat
ggctataaaggagaaaaaggtgatccaagctcaggatctggatatggctaccctggtgcc
cctggtcctcctgggcctcccggccctcctggccccactgtgtctgtggataggtttaat
agatatgaaacagataggaactacccagcggagaaaggagagaaaggagaccgcggtgac
cccggcattcctggaactccagcctcttcctatgacattgaatatctgtcagggaagctg
aaaggagagcgaggagacacaggcgggaagggagagaagggagagccaggcggaggctac
tacgatccccgctacggaggtggccaagggccccaggggcccccagggaatccaggactt
ccaggtccaaagggagattcgatccgaggacctccaggaccacagggcccatcagggccc
ccaggagccggttatgatggtcgcccgggtgtgcctggccctcctggaccacctggaccc
ccaggagctctccctggagcttatcgacccaccatcagtatccctggacctcctggtcct
gccgggccacctgggcatcctggacaatcatctgctgtcaccgttcagaggacatacgat
gtgatcgagactgcgaggagatacccagagggcaccctagtcttcgacatggaaaaaatc
agtctctatgtcagagtccgagacggcatccgccaagttcagcttggagattatctgcca
ttcttcactggtctggacaatgaggtagcggctgcccagcctcctccagtgatccactac
ccagaccacggagcgggcagtgtcactcgacccatcgagccaccaccccagcagcccgcc
gatgtccccaggcgcgagccggaaccggacccccgctacccatctcaccacgatcccaga
tacccccagaaccctgactacagacaccctccacagtcgcacccgagataccctgagcag
ccggaccccaggcaacccactcagcccgagatcaggcaccctgtgacccctgtacgcagg
cctgagccccagcctgccagacccgtggacactacaggcccagggctgcatctgatcgct
ctgaacgcgccccagtcaggcaacatgcggggcatccgtggggccgacttcctgtgcttc
cagcaggctcgtgctgtgggcctgtcgggcacctaccgggccttcctctcctccaaactg
caggacctctacagcatcgtgcgcaagtccgatagggatactctgcccatcaagaacctt
aagggccaagtgctgttcagcagctgggagtctctcttctcggaggccgagggcaggatg
aaggacaacgctcccatctactcctttgatggccgagacatcctcagggacagtgcatgg
ccagagaagatgatctggcacgggtccagccctcggggccagcgtcagacggacaactac
tgtgagacatggcggacgggtgaccgggcagtgacaggcctggcctcctcgctgcagtcc
ggtcagctactccatcagacaccacacagctgctcgggctcctacatagtgctgtgcatc
gagaacagctacatctcacactccaaaaagtaa
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