Alosa sapidissima (American shad): 121704061
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Entry
121704061 CDS
T11137
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04382
Cornified envelope formation
asad04510
Focal adhesion
asad04512
ECM-receptor interaction
asad04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121704061 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121704061 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121704061 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121704061 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asad04147
]
121704061 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
asad00536
]
121704061 (col4a2)
Exosome [BR:
asad04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121704061 (col4a2)
Glycosaminoglycan binding proteins [BR:
asad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121704061 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121704061
NCBI-ProteinID:
XP_041940585
LinkDB
All DBs
Position
2:15709493..15786665
Genome browser
AA seq
1676 aa
AA seq
DB search
MKFEVRMEGVMGHLHIRKTKLLRFLILCLTFVVLISETNAGGKKYDGPCGGRDCSGGCKC
YPEKGGRGQPGPLGPQGPQGPVGRDGDPGLQGPKGEGGDKGRTGSMGPKGSVGMTGIPGF
SGGNGIPGHPGQGGPRGKPGADGCNGTRGDAGFPGNPGTPGRPGYNGQPGRKGEKGDDLD
LHIFMRRFQGEAGFPGAPGYPGGIGNPGWRGPSGMIGPQGPPGLPGPKGEKGTMTQVIKG
EKGDVGDTGEPGPPGNVTYQHIGQKSPTDFRGIKGERGDMADNKGEDGIMGMPGQRGLPG
LNGQKGLPGDYGYPGSPGRPGLKGVRGEAGLLIYSGTGPRGVGPMGPEGELGTQGEIGPQ
GEKGLPGLPGSPASEQQGLDFFGMFGDKGSKGQKGSEGEAGTPATQPGPPGLNGLDGDMG
FPGPQGSWREHLKGAAGPGGRPGSAGRRGETGDHGDCVCDTVNSPAGPPGPAGSIGSFGM
QGEFGQLGDQGDPGLPGIPGMPGFPGRDGIPGPKGRKGETTVATQKGLPGDVGDPGRPGT
PGPQGLNGINGIPGTAGLHGLPGEALVGDPGDPGYSGRPGLRGLSGLQGEAGRALSATKG
ERGLPGDPGIRGHGGMPGPAGTPGGCIQVGERGLVYKEGECDAVPGPPGEPGLHGLPGLD
GVPGFPGLKGFAGLSGESGFKGERGDPGRGGPPGPSGFTGPRGDLGTPGFKGSPGSPGLP
GFNGRDGEPGAKGAHGDVLDASTGPPGEPGPAGHLGEPGLPGSPGTRGYQGMAGMPGMIG
VKGDYGPYGAEGERGRPGPAGKIGFPGQPGKAGIPGPPGTLGQPGFPGDRGSDGDPGVPG
PFGMKGFPGDPGSDGNPGSSGSLGDLGNPGPPGHIGVVGLKGYQGSPGMPGFTGMPGVSG
IKGFAGHPGEPGLYGEPGHKGGKGRPGLKGDRGIPGKPGEFRMDEVVKKAMKEMKGAKGD
HGTPGVFGFPGPRGPKGLPGFPGSSGHDGYPGEPSDKKGEKGDPGNPGWPGQKGMPGPTG
PTGIGGFPGMPGYRGEKGGIGAYGRSGESGIKGIKGELGPTIDLPGPTGRRGEPGLPGYS
GGPGLLGVTGDRGNPGYSGIGGMKGGPGDPGFFGAKGSDGQQGTPGQQGQKGYPGVPGAH
GTKGAEGHPGQPGFPGQTGIGGLDGLKGNKGLPGISGLDTVGPPGHPGAKGQKGELGIPS
TLVGSQGGDGAKGYSGDPGDQGRPGPQGPQGPPGFGGTPDRPGRPGDTGYPGQKGLPGFP
GPRGTPGIPSVFGDKGDKGIGGLFGLTGLKGLQGDRGQEGFPGPNGISGQKGVKGETGMM
GPPGKPGFKGDRGHSGPKGQTGQPGFPGATGAQGRPPIPVKIPAERGPPGPPGQWGPGGT
KGAPGYPGPHGDPGFEGLKGDKGMPGVSGRSGTPGFRGDPGYQGYPGIQGLEGSRGLPGI
PGRGGMPGRSVSVGYLLVKHSQTDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAG
SCIPRFSTMPFLYCNPNDLCRYADRNDKSFWLSTTAPIPMMPVEGEEIKPYISRCSVCEA
PSVAIAVHSQDVTIPQCPLGWRSLWIGYSFLMHSAAGKQGGGQLLVSPGSCLEDFRSTPF
IECNGAKGTCHYFANKYSFWLASMEQNFNSSPGSETLKAGQLLSRISRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagtacggatggaaggggtgatgggccacctacacatcaggaaaacgaaa
cttttaaggtttctcatattgtgcctgacgttcgtcgtcttgatatctgaaacaaacgca
gggggtaagaagtacgacggaccatgtgggggaagagactgcagtggaggctgcaaatgc
taccctgagaaaggaggcaggggccagcctgggcctctcggtcctcaggggccccagggt
ccagtcgggcgtgacggggaccccggcttgcaggggcctaaaggagaggggggagacaaa
ggaagaacaggctccatgggccctaaaggatcagtgggaatgacaggaattccaggtttc
tcaggaggcaatggcattccaggtcacccaggacaaggaggtccgcggggcaaaccaggg
gcagatggctgcaacgggaccagaggagacgcagggttccctgggaacccaggcaccccg
ggcagaccaggatacaatggtcaaccaggtcggaaaggagagaaaggagatgatttggac
ctgcacatcttcatgaggagattccagggagaggcaggctttccaggcgctcctggatat
cccggaggaattggtaacccgggttggaggggacccagtggtatgattgggccacagggg
ccacctggtttacctggacccaaaggcgaaaagggcacaatgacccaagtgatcaagggg
gagaaaggagacgtgggtgacactggtgagccagggcctccaggaaacgtcacttatcaa
cacatcggccagaaatctccaacagactttagagggatcaaaggagagcgcggagacatg
gctgacaacaaaggagaagacggtattatggggatgccaggacaacgggggttacctggt
ttgaatggacaaaaaggactgccgggtgactacggatatccaggatctcccggaagacca
gggctgaagggtgtgagaggagaagctggtttgctcatctacagtggcactggaccgcga
ggagttggaccgatgggcccggagggagagcttgggacccagggagagataggacctcag
ggggagaaaggcctgcctgggctccctggatctccagcttctgaacaacaaggattggac
ttttttggcatgtttggtgataagggctcgaaaggccagaagggttccgagggggaggca
ggaacccccgccacccagccgggtccccccggactcaacggcctcgacggtgacatggga
tttcctggaccccaaggatcatggagagagcatcttaaaggagcagcaggcccgggcgga
agaccaggctcagctggacggagaggagagacaggagaccatggtgactgcgtgtgtgac
acggtgaattcccctgccggcccaccgggtcccgccggtagcatagggagctttggcatg
cagggagagttcggtcaactgggtgaccaaggggacccaggtctgcctggtatacctggc
atgcctggttttccgggtcgtgatggcataccaggacccaagggaagaaaaggagaaacc
acagttgcgactcaaaaaggattgccaggggatgtaggagacccaggacgaccagggacc
ccgggaccacagggtctcaacgggatcaatgggatccccggcactgctggactccatggc
cttccaggcgaggccttagtgggtgaccctggagatccaggctacagcggccggccgggc
ctgcgtggtctttctggcctgcagggagaggctggtcgggcgttaagcgccaccaaaggc
gagaggggtctgccaggcgaccccggaatccgaggacacggtggaatgcccggtcccgct
ggaacgccaggaggctgtattcaagttggagaacgaggactggtgtataaagaaggggaa
tgtgacgcagtgccgggaccccctggtgagccaggactccatggtctccctgggctggac
ggtgttccaggatttccagggctcaaaggatttgcagggctatccggcgagtcggggttc
aaaggagaacgtggagatcctggtcgtggtggaccccctggaccgagcggcttcaccggt
ccacgcggtgacctgggtacacctggtttcaaagggtcccccggatcacctgggctgccc
ggcttcaacggccgggacggtgaaccaggtgcgaagggagcccacggtgacgtgttagac
gcttccaccggaccccctggtgagcctggacctgctgggcatctgggagagcctggatta
ccaggatcgcctggcacccggggataccaaggaatggctgggatgcctggcatgattggc
gttaagggtgattatgggccttatggagcagaaggagaaagaggtcgccctggcccggca
ggaaagatcgggtttcctggacagcctgggaaagctggtattccaggacctcccggaacc
ttgggacagccaggctttcctggagaccggggaagcgacggtgaccctggagtcccaggg
cccttcggcatgaaggggtttcctggtgatcctggcagtgatgggaaccccggaagttca
ggatcactgggggatctcggaaatccgggaccaccgggacatatcggtgttgttggtttg
aaaggttaccaaggttctccaggtatgccaggcttcactggcatgccaggggtgagcgga
attaagggctttgctgggcatcctggagagcctgggctttatggagaaccaggccacaaa
ggtggcaagggcagacctggtctaaagggggatagaggaatacccggcaaaccaggagag
ttccgcatggatgaagtagtgaagaaggccatgaaggagatgaagggggccaagggggac
cacggcacgccaggggtgttcggcttccctgggcccagagggcccaaaggcctcccaggg
tttccaggttcctcgggccatgatggctaccctggagagcccagcgataagaagggtgag
aagggagatccgggaaatccggggtggcctggccagaaggggatgccaggccccactgga
ccaacaggaattggaggattccctgggatgccaggctatagaggggagaaaggcgggatt
ggtgcctatgggcgatcaggagaatccggaatcaagggtatcaaaggtgaattgggtcct
acaattgatctccctggacctactgggcgtcggggtgaaccagggctgccaggttattca
ggtggaccgggcctcctcggtgtaacgggagacagaggcaaccctggctactccggtatt
gggggcatgaaaggaggaccaggtgaccccggcttttttggagccaaagggtctgacgga
cagcaaggaacgcctggtcaacagggccagaagggctatccaggagtccctggtgcccat
ggaaccaaaggagctgaagggcatcctggacaaccaggcttccccggtcagacaggaatc
ggtggacttgatggtctgaaaggaaacaagggattgcccggcatatcaggtcttgacaca
gtggggccaccaggccaccctggtgctaaaggccagaaaggagagttgggcatccccagc
acactggtcggcagccagggaggagacggcgcgaaaggatattcaggagatccaggtgat
caaggacggcctggccctcaaggtccacagggtccaccagggttcggaggaaccccagac
agacctgggcggcctggagatactggttatcccggacagaaaggactcccaggcttcccc
ggacccagaggcacaccaggcatcccctctgtgtttggggacaagggagacaagggcata
ggcggcctgtttggccttactggtctgaagggcctccagggtgacagggggcaggaaggg
tttcctggaccaaacggaatctcaggacagaaaggggtcaagggagaaacaggcatgatg
ggacctcctggcaagccaggctttaaaggagaccgcggccactccggtcccaaaggacag
actggacaaccaggtttccccggggccacaggggcgcagggacgtcctccgatcccggtc
aagattcccgcggagagaggtccaccagggcctcctggacaatgggggcccggaggcaca
aaaggagcaccgggttacccaggaccacatggagacccaggctttgaggggcttaaagga
gacaaaggaatgccaggtgtcagtggacggtcgggaacacctggtttccgtggagatcca
ggataccagggataccccggtattcaaggcctggaaggttctcggggcctccctggcatc
cctggtcgtggtggcatgcctgggcgtagcgtgagtgtgggctacctgctggtcaagcac
agccagaccgaccagacgcccatgtgtccagtgggcatgtctaagctgtgggacggatac
agcctgctctacttcgaaggccaggagaaagcccacaaccaagacctaggtctggcgggc
tcctgcatcccacgtttcagtaccatgcccttcctctactgcaaccccaacgacctgtgc
cgctacgctgaccgcaacgacaagtcattctggctgtccaccacggcgcccatccccatg
atgccggtggagggcgaggagatcaagccgtacatcagccgctgctcggtgtgcgaggcg
ccctctgtggccattgccgtccacagccaggacgtcaccatcccgcagtgccccctgggc
tggcgcagtttgtggattggatactccttcctcatgcactctgcagcggggaagcagggt
ggcgggcagctgctggtgtcgccagggtcgtgcctggaggacttccgcagcacgcccttc
atcgagtgcaatggtgccaagggcacgtgccactacttcgccaacaagtacagcttctgg
ctcgcgtccatggagcagaacttcaacagctcgccgggcagcgagacactcaaggccgga
cagctactctcgcgcatcagccgctgccaggtctgcatgaagaacctgtga
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