Alosa sapidissima (American shad): 121704608
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Entry
121704608 CDS
T11137
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03440
Homologous recombination
asad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121704608 (top3a)
03460 Fanconi anemia pathway
121704608 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121704608 (top3a)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121704608 (top3a)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121704608 (top3a)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Topoisomerases
121704608 (top3a)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121704608 (top3a)
FA (Fanconi anemia) pathway
121704608 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
T2SSF
Motif
Other DBs
NCBI-GeneID:
121704608
NCBI-ProteinID:
XP_041940926
LinkDB
All DBs
Position
3:complement(9087839..9100112)
Genome browser
AA seq
1022 aa
AA seq
DB search
MIINVINRSLLQVRRLLVQRRFCQQGSENMIRRTQIKKVLCVAEKNDAAKGISEIMSNGR
ARRKEGLSVYNKLYEYEYNLFGQNVSVTMTSVSGHLLGLEFKTPFQKWHSCNPVLLFEAE
VEKYCPENFIQIKRTLEREVRQCQALIIWTDCDREGENIGFEVIDVCKAVKPNIQVFRAH
FSEITPNSIRRACETLTEPNVNISDAVDVRQELDLRIGAAFTRFQTMRLQKIFPESLANQ
LISYGSCQFPTLGFVVERFKSIQAFIPETFFKIKVLHEPNEEEMVEFVWKRHRLFSHTAC
LVLYQICMEDPTATVVAVTSKPKSKWRPQPLDTVELEKAASRKLRINAKETMKIAEKLYT
QGLISYPRTETNIFPKDLNLTSLVQQQTQDNEWGAFAQGILDRGGPTPRNGNKSDQAHPP
IHPTKYTNSLQGNEKRLYEFIVRHFLACCSQDAQGQETTVDIDIAEEKFSASGLMIIARN
YLDVYPYDKWYTKIIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLISLMEKHGIGTDA
THADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVS
EGRKDKASVLRHHVAKYKAVFIESVQKAKKLDEALSSYLGQAQEYTEQEQEIELPMPVRK
CPSCNRDMVLKQKKDSTTKFLSCTGYPACKSAVWFPDSVLEVRRDDSICPTCRPHPVHML
KLKFKRGSLPPMMPLEFVGCIGGCDETLREVLNLKYLRPGGGGGGGGGQASQSSFSATPR
QQSQPRANPGPRPRADSSRPPAPRPRAESGRPSAPPPPAPVWSSQPPAAVQNNATVCNCG
QDALLLTVRKEGPNQGRQFYKCNSGNCNFFLWADQPNDQGLGQTTGRNQPPRPTPQPPRP
SLGFGNTNQGFMNGGSGGGNGDETMCNCNEAAVTRTVMKDGPNKGRMFHTCGKPREQQCG
FFQWADENVPPSVSRGFNNGETERRGRKTGPHSTKAPGAKRPRTCGICHQPGHTRTTCPQ
GN
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgataattaatgttatcaatagatcactgctccaagtgagaagactgttagtgcagaga
cgattttgtcagcaagggtcagaaaacatgatcagacgaactcagattaagaaagttctg
tgcgttgctgagaagaacgatgcagccaaggggatatctgagattatgtcaaatggaagg
gcaagaaggaaagaaggattatccgtgtacaacaagttgtatgagtatgagtataacttg
ttcggacagaatgtctctgtgaccatgacctcagtgtctggacatctcttaggtttggaa
ttcaaaactccttttcaaaaatggcacagttgtaatccagttttattgtttgaagctgag
gttgaaaagtattgcccagaaaacttcatacaaataaagaggactctagagagagaggtt
cgacaatgccaggccctaatcatatggacagattgtgacagagagggagaaaacattggc
tttgaggtcattgatgtttgcaaagcagtcaagccaaacatccaagtgtttcgagcccat
ttttctgaaatcacaccaaactctatcaggagagcatgtgagacactgacagagccaaat
gtcaacatcagtgatgcagtggatgtcagacaagagctagatttgcgaattggagcagca
tttacgaggtttcagactatgcgcttacagaagatcttcccagaatctctggccaatcag
ctcataagctatggaagctgccagtttcctacactgggatttgtggtggagcggttcaaa
tctatccaagctttcatccctgagaccttctttaagatcaaagttctccatgaaccaaat
gaggaggaaatggtagaatttgtttggaaaaggcatcgtctcttcagccatactgcctgc
cttgtactctatcagatttgcatggaggatcccactgccactgtggttgctgtcacaagt
aaacccaaaagtaaatggagaccacagcctcttgacactgttgaactcgagaaagcggcc
tcacgcaaattgaggatcaatgcgaaagaaaccatgaaaatagcggaaaaactttacact
caagggcttatcagctatccccgcactgagaccaacatcttcccaaaagacctcaacttg
acctccctggtacagcaacagactcaggacaatgagtggggggcatttgcacagggcatt
ctggataggggtgggcccactcctcgaaatggaaacaaatctgatcaagcccatcccccc
attcaccccaccaaatacaccaacagcctgcagggcaacgaaaaacgtctgtatgagttc
atagtccgccatttcctggcttgttgctcccaggatgcccagggacaggaaaccacagtt
gatattgatatagctgaggagaaattctctgcaagtggccttatgatcatcgcccggaac
tatctggatgtttacccctatgataaatggtacacaaagataattccagtctatgaacag
gggtctcagtttcagccatcggccatagagatggttgatggacagacgagcccaccacaa
ctgctgacagaagctgacctcatttccctcatggaaaaacatggcattggcaccgatgcc
acacatgctgatcacatcgagaccattaaaagccgaatgtatgttggactgactgcagac
caaaggtttctcccaggggagcttggcatgggcctggtggaaggttacaactccatgggc
tatgagatgtccaagccggacttgagagcagagctggaagcggaccttaaactggtctct
gagggaaggaaagataaagcctctgtcctgcgacatcatgtagccaaatacaaggctgtg
ttcatcgaatctgtacagaaggcaaagaagttggatgaggctctgtcaagttacctaggc
caggcacaggagtacacagagcaagagcaggagatagagctgcccatgcctgtgcggaag
tgtcccagctgcaatcgagacatggtcctgaaacagaagaaggacagcaccacgaaattt
ctgtcatgtacaggataccccgcctgcaagtcagccgtgtggttcccagactctgtgctg
gaggtcagaagagacgacagcatctgtccaacttgccgacctcatcctgtgcacatgttg
aagttgaaattcaagaggggaagccttcctcccatgatgcccttagaatttgtgggttgc
atcggtggatgtgatgagactttgagagaggtgctgaatctgaagtacctgaggccagga
ggaggaggaggaggaggaggaggacaagccagtcaatccagtttcagtgccaccccacgt
cagcagtctcagcccagagccaacccaggtccaaggcccagggctgacagcagtagacct
cccgccccaaggcctcgggctgagagtggcaggccgtctgctccacctccccctgcacct
gtctggtcgagccagccacctgccgctgtccaaaacaacgccacggtgtgcaactgtggt
caggatgcccttctcctcaccgtgcgcaaggaaggtcccaatcagggtcggcagttctac
aagtgcaactcgggcaactgtaatttcttcctgtgggcagaccagccgaatgaccagggg
ctagggcagaccacagggagaaaccagcctcctcgaccaacccctcagcctcccaggcca
tctcttgggtttggcaacacaaaccaagggttcatgaacggagggtctggtggtggaaac
ggagacgagaccatgtgtaactgtaatgaagcggccgttaccagaacagtgatgaaggat
gggcccaataaagggcgcatgtttcacacctgtgggaaaccgcgcgagcagcagtgtggc
ttcttccagtgggctgacgagaacgtcccaccatcagtctcaagaggattcaacaatgga
gaaacagaaagaaggggaagaaagacaggacctcattcgacaaaagccccgggggctaag
agacccaggacttgtgggatatgccatcagcctggacacacacggacaacatgcccccag
ggcaattaa
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