Alosa sapidissima (American shad): 121704619
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Entry
121704619 CDS
T11137
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121704619 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121704619 (cpsf4)
03019 Messenger RNA biogenesis [BR:
asad03019
]
121704619 (cpsf4)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121704619 (cpsf4)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121704619 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
121704619
NCBI-ProteinID:
XP_041940942
LinkDB
All DBs
Position
3:9134693..9137464
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AA seq
267 aa
AA seq
DB search
MQDLIATVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRASCMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGRSCKFMHPRFELPMGATEQPP
LPLQAHTQQKTMQSTNRSSLSLIQLTNINSNHQQRMPHNIGPMNSQNNMGGNRGPRPLDQ
VTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatctaatagcgactgttgaccaccttaaatttgatctggagattgctgttgag
caacagctgggtgcccaaccgttgccttttcctggaatggacaaatctggtgctgctgta
tgcgaattcttcatgagggcatcttgcatgaagggtggcatgtgtcccttccggcacatt
agtggagaaaaaacagttgtttgcaaacactggcttcgagggttatgcaaaaagggggac
cagtgcgagttccttcatgagtatgacatgaccaagatgcctgagtgctatttttattcc
aaattcggagagtgcagcaacaaagaatgtccctttttacatattgaccctgaatcaaag
attaaagactgtccgtggtatgacagaggattctgtaaacatggcccggattgtagacac
agacatacacgaagagtcatttgtgtcaactaccttgttggcttctgtccggaggggagg
tcctgcaagttcatgcacccacgttttgagttgccaatgggtgctactgaacaacctcct
ctgcctctgcaggctcatactcaacagaagaccatgcagtccacaaacaggtcgtcactg
tcactgattcagctgaccaatataaattctaaccaccaacaaaggatgccgcacaatata
ggaccaatgaattctcaaaacaatatggggggaaacagaggtcctcggccattagatcaa
gtcacctgttacaagtgtggcgagaagggtcactatgccaacaagtgtacaaaaggacat
ctggctttcctcagtggacagtag
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integrated database retrieval system
