Alosa sapidissima (American shad): 121704745
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Entry
121704745 CDS
T11137
Symbol
rbm12bb
Name
(RefSeq) RNA binding motif protein 12Bb isoform X1
KO
K24526
RNA-binding protein 12
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121704745 (rbm12bb)
Spliceosome [BR:
asad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121704745 (rbm12bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
Tlr3_TMD
Motif
Other DBs
NCBI-GeneID:
121704745
NCBI-ProteinID:
XP_041941123
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All DBs
Position
3:10674885..10693627
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AA seq
719 aa
AA seq
DB search
MVSMQLSLLYSSAFGLVLRQHREERLWELVWWLCCVTNNAVLYAPLSAGAVVLFFVMAVV
IRLQGLRITAGSEDIRSFFTGLKIPDGGVHIIGGELEEAFIIFASDEDARRAMSRSGGCI
KGSPVNLLLSSRSEMQKVLEASTKKPDANARRTYKDNGRSAEAEPLSFGGKPSVERHRAD
GNPHPEVGNRSLSSGRRSQTRQPGQESRDDLYLHLYGMPFSATKEDILQFFEGLRVEDII
IFRNNQGKPSGAGMVKFATAQDAAEGLKRDREYIGSRYVRVNPSAEKKWLLAGGDGEPEP
VPNPTGYSTMPSPTYTSRKHEPDRPKSRSPVPYRSRSASPAKEEFCVLVDNLSYAVEKKD
LKDFFHPIPLKDDQIIHVNDKYGKRTRTALVMFSSLRDYCAGLSHHREELCNKTVNVSPV
SKERMIAMLQSMNQQLEDPEEPSHSGQRSPSHGRDGFDSDRICLYVRNLPFDVRKVEIMD
FFHGFRISDDSLILLRDEHGAGLGEALMIFQTENEAMMAQSLNGQRFLGSEVMLKCITRA
QMREFGISDQIGFGPNEIPRETGEVRYPARQDGRPNFPADKVYTEGLSPPDIHPHRDDLP
VQPFGRREDQYDLQLDHHDAFGGRGEGPLNQGFGPPGQHSDSPTCVILSNLPVRIKYDEI
YDFCYGYRVIPGSVTVKCDRRTMTSSASVVFESHREALTAVKELHGRPIGKRTITVKFE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtatgcagcttagccttctctactcaagtgcgtttggactggtgttgagacag
catagagaagaaaggctttgggagctggtgtggtggctttgttgtgtcaccaataatgct
gttttatatgcccctctgtctgcaggtgctgttgttttgttcttcgttatggcggtggtc
atccgattacagggactcagaatcacggctggttctgaggatattcgcagtttcttcact
ggcctcaaaatcccagatggtggggtgcatatcattggtggcgagcttgaggaagcattc
atcatctttgcatctgacgaagatgccaggcgtgcaatgtctcgctcaggcggttgcatt
aagggttcccctgttaacttactgctgagtagcagatcggagatgcaaaaggttctagag
gcaagcactaaaaagccagatgccaatgctaggaggacgtacaaagataatggtcgatct
gcagaagctgagcctttgtcttttggtgggaaaccttccgtggaaagacatagagcagat
ggaaatcctcacccagaggttggaaataggtcactttccagtgggaggcgcagtcagaca
agacaacctggccaagaaagcagagatgacttgtacttgcatctgtacggcatgccattt
tctgccacaaaagaagacatccttcagttttttgagggattgcgggttgaggacattatt
attttcagaaataatcaaggcaagccaagcggagctggcatggtaaaatttgctacagct
caagatgctgctgagggtctgaagagggaccgtgaatacattggatctcggtacgttcgc
gtcaatccaagtgcagagaagaagtggttgctggcaggtggagacggtgaaccagaacca
gtcccaaaccccactgggtacagtaccatgccaagccctacgtacacttcaagaaaacat
gaacctgatcgccccaaatcacgctcaccggtgccgtaccgttctcggtctgcctctcct
gctaaggaagagttttgtgtgcttgtggataacctttcttatgctgtggagaagaaggac
ttgaaagattttttccaccccattcccttaaaggatgatcagatcattcatgttaacgat
aaatatgggaaaaggacaaggactgcccttgtcatgttcagtagcctaagggactattgt
gctggcctgtctcaccatagggaagagttgtgcaacaaaactgtgaacgtatctccagtt
tctaaagaaaggatgatcgctatgctgcagtcaatgaaccagcagctagaagacccagag
gagcccagccattcaggtcaaaggtcaccatcccatggcagagatgggtttgactcggac
agaatttgtctctatgtgcgcaatctcccttttgatgttcgaaaggtggagattatggac
ttttttcatggctttagaatttccgatgattccctcattcttcttcgagatgaacatgga
gctggacttggtgaggcactgatgatttttcaaactgaaaacgaggcaatgatggcacag
tctttgaatgggcaacgttttctgggttcagaggttatgttgaaatgcatcaccagggct
cagatgcgagagtttggtatatcagaccagataggttttggcccgaatgaaattccaagg
gaaactggagaggtgaggtatccggcaaggcaagatggcagaccgaatttccctgcagac
aaagtgtatacagagggcttgtctccaccagatatccacccacaccgtgatgatctgcct
gttcaaccttttggccgaagagaagaccagtatgacctacagttagaccaccatgatgct
tttggaggcagaggagaaggccccttgaatcaaggctttgggcctcctgggcaacattct
gatagccccacctgtgtgatactgtcaaatctgccagtacggatcaaatatgacgagatc
tatgatttctgctatggctacagagtgatcccaggatctgtgactgtgaagtgtgaccga
cgtactatgactagttctgcttcagttgtgtttgaatcacaccgtgaagcattgactgct
gttaaagaattgcatggaaggcccattgggaagagaacaatcactgtgaagtttgaatga
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