Alosa sapidissima (American shad): 121704956
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Entry
121704956 CDS
T11137
Symbol
notch3
Name
(RefSeq) LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 3
KO
K20995
Notch 3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04330
Notch signaling pathway
asad04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121704956 (notch3)
04371 Apelin signaling pathway
121704956 (notch3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
EGF_2
Ank
Notch
NODP
EGF_3
NOD
Ank_4
Ank_3
Ank_5
EGF_Teneurin
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
121704956
NCBI-ProteinID:
XP_041941474
LinkDB
All DBs
Position
3:complement(3573172..3611962)
Genome browser
AA seq
2479 aa
AA seq
DB search
MGIYSIWIFLSFLCVVQHIDGLRCVDSYRPCENGGICSNSKCMCRPGYIGNLCQHLDPCH
RTPCLNGAVCKSQVANGIPQYTCVCQRGFRGQDCSLIDACATSPCANGARCVNWNNHYNC
SCPPGYQGKNCRNDIDECRKPGKCLNGGVCQNTHGSYTCRCPPGYSGRTCEIVTLPCAPS
QCLNGGTCHQISDHAYECACLPGFEGHNCETNVDDCPGHKCMNGGICVDGVNTYNCQCPP
EWTGQYCAEDVNECLMQPNACHNGGTCFNTIGGHTCVCVNGWTGDDCSENIDDCATAVCF
NGATCHDRVASFFCECPVGKTGLLCHLDDACVSNPCNEGAVCDTNPLNGRAICTCPAGFV
GGACNQDMDECSIGANPCEHFGKCVNTEGSFQCQCGRGYTGPRCEIDINECLSMPCQNDA
TCLDRIGEFTCICMPGYTGTYCEVDLDECESNPCVNDGICRDMVNGFSCTCQPGFSGTMC
QIDIDECASTPCQNGAKCFDRPNGYECRCAEGFEGPLCESNIDNCRPDPCHHGTCIDGIA
TYTCNCEPGYTGYRCENQLNECHSNPCQNGGKCVDLVNKYICQCLHGTSGVNCELNFDDC
ASNPCEFGMCKDGINRYDCVCKPGFTGPKCNVEIDECSSNPCRNGGTCVDEENGFHCQCP
EGFHEPYCYSKVDECASNPCVNGACREDPNGYRCDCEPGWVGKNCDLNRNDCLPSPCQNA
GTCIDQLNGFVCKCRQGFKGNLCQVNINECSSSPCLNGGTCVDGVASFTCLCELPYSGPT
CAEVLTPCSPNPCSNHAQCLHTPDYLGYQCSCQAGWQGQLCNVDVNECYPSNPCKNRGTC
TNTLGAYVCSCRAGFTGPNCETDINDCSPSPCLNGGSCTDGVNSFQCSCLPGFTDTRCAV
EVNECQSAPCRNGGTCTDYVNSYTCTCKPGFTGIHCETNIPDCTESSCFNGGTCTDKING
YTCTCRPGFTGSHCQYEVNECDSQPCLNGGLCQDALESFRCSCPKGYSGGRCQSAVDWCR
RSNPCQNGGRCRQKDAAFTCDCVNGWSGRYCDIPGVSCEVAAAQRGYQTDELCHHGGHCV
NTGNTHYCKCPDDYMGSYCESQVDHCEDKPCRNGATCRGYVGGYTCDCMPGYHGENCEME
INECQSHPCQNGGTCIDLVGHYICSCPPGTLGVLCEINEDDCSMPARPRGTPKCLNNGTC
VDRVGGYKCNCPPGFTGDRCEGDINECLSNPCNMGNSLDCIQLPNDYQCICKPGYTGRRC
QNRFSVCESQPCQNGGACSVSSNTASGYTCTCQLGYTGANCERSMSCRELSCYNGGSCML
TTRGARCSCLQGYAGPQCQHRSNEGCSAQPCRNGGLCTEETSFPYFHCQCQPGYSGKRCE
QQTAQIPSPKTLPPPPACPLADCPGKANDGVCDKECNTFACRWDGGDCSLAANPWAKCAD
PHCWRVFNNSQCDESCNNADCLYDNFDCRSKEKVCNPIYETYCIDHFADGRCDQGCNTEE
CGWDGLDCAQKVPENLAEGVLVITVLLPPEELLRTGTAFLQKLSAILRTSLRFHLDHNGE
AMIKPYMHRLKKRELQPQQEVIGSIVYLEIDNRLCSQGSEGCFPTADTAAEYLGALHATE
MLRFPYPIKEVRSEQLPPGPIDVPEWGKLLLVGVAALFLMVILLLGMLIARRKREHSTLW
FPEGFFLKKEASSNKNRREPVGQDALGMKHMPKTVEESLLGDHSDQWIDTDCPEAKRLKV
EEPSMMSDSDDPVDSRQWTQHHLAAADIRMPTSMALTPPQGEFDGDXFDGDCMDVNVRGP
DGFTPLMLASFCGGLEPEVAEEEEEESSANIISDLIYQGASLAAQTDRTGETALHLAARY
ARADAAKRLLDAGADANAQDNTGRTPLHAAVAADAQGVFQILIRNRATDLDARMYDGSTA
LILAARLAVEGMVEELITCHADVNAVDELGKSALHWAAAVNNVEATMALLKNGANKDMQD
LKEETPLFLAAREGSCEAVKVLLAHFANREITDHMDRLPRDIAQERMHHDIVQLLDEYNT
VRSPQGHSAAAHHLAAAAAAGHTLSPLMCPPSSFMSGLKTTPQGKKSRRPGAKGSGGMAG
QHGGSISLKESAKARNKKLTLDMQSALLESSVTLSPVDSLDSPHGGASNAGYMTNPTSPV
AMPSPGMFHTSMSVPGTPMVHAGMLDGSGGPFAVSLAQLNDLSGGGADGGLSMQARVSMA
SAVAAANQHSYVLNSGQLGMSMGMVNPVSVPFDWHSRMTPSSQCGPVVSMVHPVSSQASL
MPPTPTMPQGGLLMHQPMFRGGQPTMLQPTLVSSTPTSISPVKLASIAEQQQPQQLHSHS
LARMGTSSPPTPQQSQPPPAFYQQAPQQPQQAPQPTQAQAAAAAAAAQPGGSGTEDYPTP
PSQHSYTSAMDATPKHYLHLPSEHPYLTPSPESPEPWSSPSPQCVSDWSESTPSPAVSGP
AQTQIPHVQESNGKMQVFA
NT seq
7440 nt
NT seq
+upstream
nt +downstream
nt
atggggatttacagtatttggatatttttatcatttttatgtgttgtacaacatatcgat
ggtctccgctgtgtggactcatacagaccctgtgagaatggaggaatatgttcaaactca
aaatgcatgtgccggcccggctacatcggaaatctctgccaacacctggacccgtgtcac
cgcacgccgtgcctcaacggagccgtctgtaagagccaggtggccaacggcatcccccag
tacacctgtgtgtgccagcgaggattccgaggtcaagactgctccctgattgatgcctgt
gccaccagcccctgtgccaacggcgctcgctgcgtcaactggaacaaccactacaactgc
tcgtgcccgcctggctaccagggcaagaactgccgcaacgacatcgacgagtgccgcaag
ccgggcaagtgcctgaacggcggcgtttgccagaacacgcacggctcctacacctgccgc
tgcccaccgggctacagtgggcgcacgtgcgagatcgtcaccctgccctgcgcaccctcc
cagtgcctcaacgggggcacatgccaccagatcagcgaccatgcctatgagtgtgcctgt
ctgccaggcttcgaaggccacaactgtgagaccaacgtggatgactgccctgggcacaaa
tgcatgaatgggggtatatgcgtggacggggtcaatacctacaactgccagtgccctcca
gaatggacaggccagtactgtgccgaggatgtgaacgagtgcctgatgcagcccaacgcc
tgccacaacggcggcacgtgcttcaacaccatcggcggccacacctgcgtgtgcgtcaac
ggctggaccggcgacgactgcagtgagaacatcgacgactgtgccaccgctgtctgcttc
aacggtgccacatgccatgatcgcgttgcctccttcttctgcgagtgcccagtgggcaag
actggtctcctgtgtcacctggatgatgcgtgtgtgagcaacccatgtaacgagggagcc
gtgtgtgacaccaaccccctgaacggccgagccatctgcacctgccctgccggctttgtc
ggtggagcctgcaaccaggacatggacgagtgctctatcggtgcgaatccgtgcgagcac
tttggcaagtgtgtgaacacggagggctccttccagtgccagtgcggccgcggctacacg
gggccacgctgcgagatcgacatcaacgagtgcctgtccatgccctgccagaacgacgcc
acctgcctcgaccgcatcggggagttcacctgcatctgcatgccaggctacactgggaca
tactgcgaggtggacctggacgagtgcgagagcaacccctgcgtgaacgacggcatctgc
agagacatggtcaacggcttctcctgcacctgccagccaggcttctccggcaccatgtgt
cagatcgacattgacgagtgtgccagcacgccctgccagaacggtgccaagtgcttcgac
cggcccaacggatacgagtgccggtgcgcagaaggcttcgaggggcccctgtgcgagagc
aacatcgataactgccgccccgacccgtgccaccacggcacctgcatcgatgggatcgcc
acctacacctgcaactgtgagccgggctacacgggctaccgttgcgagaaccagctcaac
gagtgccacagcaacccctgccagaacggcggcaagtgtgtggacctggtcaataagtac
atctgccagtgtctgcacggcacctctggtgttaactgtgagctcaactttgatgactgt
gccagcaacccatgtgagtttggcatgtgcaaggatggcatcaaccgctacgactgtgtc
tgcaagcctggcttcactggcccgaagtgtaatgtggagatagacgagtgctcgtccaat
ccgtgccgtaacggcggcacctgtgtggacgaggagaacggcttccactgccagtgtccc
gagggcttccacgagccctactgctactccaaggtggacgagtgcgccagcaacccctgt
gtcaacggagcctgcagagaagaccccaatggctataggtgtgactgtgagcctggatgg
gtggggaagaactgcgacctgaaccgcaacgactgccttcccagtccgtgccagaacgct
ggcacctgcatagaccagctcaacggtttcgtctgcaagtgccgccagggcttcaaaggt
aatctgtgccaagtgaacatcaacgagtgctcgtcgagtccgtgtctgaacggcggcacc
tgcgtggatggcgtggccagcttcacctgcctctgcgagctgccctacagcgggcccacc
tgtgccgaggtgctcacgccctgctcgcccaacccctgctccaaccacgcccagtgcctc
cacacacccgactacctgggctaccagtgcagctgccaggctgggtggcaaggccagctg
tgtaatgtggatgtgaatgagtgctacccctccaacccctgcaagaaccgcggcacctgc
accaacacactcggggcctacgtgtgctcctgccgtgccggcttcaccgggcccaactgc
gagacggacatcaacgactgctcacccagcccctgtctgaatggaggctcgtgcacagac
ggcgtgaacagcttccagtgcagctgcctgcccggcttcaccgacacacgctgcgccgtg
gaggtgaacgagtgccagagcgccccctgcaggaatggaggcacctgcaccgactacgtc
aacagctacacatgcacctgcaagcctggcttcacgggcatccactgcgagaccaacatc
cctgactgcaccgagagctcctgcttcaacggaggcacctgcacggacaagatcaacggt
tacacctgtacatgccgcccagggttcaccggctcgcactgccagtacgaggtgaacgag
tgtgactcacagccgtgcctcaacggaggcctgtgccaggatgccctcgagtccttccgc
tgctcctgtcccaagggctactccggtggcaggtgccagagtgctgtggactggtgccgt
cgctccaacccatgccagaacggcggccgctgccgtcagaaggacgccgccttcacctgc
gactgtgtaaatggctggtcgggccgctactgcgacatccctggggtgtcctgcgaagtg
gccgccgcacagagaggctatcaaactgacgagctgtgtcaccatggtggacactgtgtc
aacaccggcaacacgcattactgcaaatgcccagacgactatatgggcagctactgcgag
agccaggtggaccactgtgaggacaagccctgccgtaacggcgccacctgcaggggctat
gtgggaggatacacatgcgactgcatgccaggctaccatggcgagaactgcgagatggag
attaacgagtgccagtctcacccgtgccagaacggtggcacctgcatcgatctggtgggc
cattacatctgctcttgcccacctggcactttgggtgtgctgtgtgagatcaacgaggac
gactgctccatgccagccaggcctcggggcacccccaagtgtctgaacaacggcacgtgc
gtggaccgtgtgggtggctacaagtgcaactgcccgcccggcttcaccggtgaccgctgc
gagggcgacatcaacgagtgcctgtccaacccctgcaacatgggcaacagcctggactgc
atccagctgcccaacgactaccagtgcatctgcaagcctggctacacaggtcggcggtgc
cagaaccggttcagtgtgtgcgaatctcagccctgtcagaatggaggcgcctgctcggtc
tccagcaatacggcctcaggatacacatgcacctgtcagctgggctacaccggtgccaac
tgtgagcgcagcatgtcgtgccgcgagctctcctgctacaacggcggcagctgcatgctg
accacacgcggcgcccgttgctcctgcctgcagggctacgccgggccacagtgccaacac
cgcagcaacgagggctgttcggcccagccgtgccgcaacggcggcctctgcaccgaggag
acctccttcccctacttccactgccagtgccagccgggctactccggcaagcgctgcgaa
cagcagaccgcccagatcccgtctcccaagacgctgccgccgccgcccgcctgcccgctg
gccgactgcccgggcaaggccaacgacggcgtgtgcgacaaggagtgcaacaccttcgct
tgccgctgggacggcggcgactgctcgctggcggccaacccgtgggccaagtgcgccgac
ccgcactgctggcgcgtcttcaacaacagccagtgcgacgagagctgcaacaacgccgac
tgcctctacgacaacttcgactgccgcagcaaggagaaggtttgcaatccgatctatgag
acgtactgcattgaccactttgccgacggccgctgcgaccagggctgcaacacggaggag
tgcggctgggatggcctggactgtgcgcagaaggtgcctgagaacctggcggaaggcgtg
ctggtcatcacggtcctgctgccgcccgaggagctgctgcgcacaggcacggccttcctg
cagaagctcagcgccatcctgcgcaccagcctgcgcttccacctggaccacaacggcgag
gccatgatcaagccctacatgcaccgcctcaagaagcgcgagctgcagccgcagcaggag
gtcatcggatctatcgtgtatctggagatcgacaaccggctgtgctcccagggctccgag
ggctgcttccccacggccgacacagcggcggagtacctgggcgccctgcacgccaccgag
atgctgcgcttcccctaccccatcaaagaagtccgcagtgagcagctgccgccggggccg
atcgacgtgcccgagtggggcaagctgctgctggtgggtgtggcggcgctcttcctgatg
gtcatcctgttgctgggcatgctgatcgcgcggcgcaagcgggagcacagcacgctctgg
ttccccgagggcttcttcctcaagaaggaggccagcagcaacaagaaccgccgcgagcct
gtgggccaggacgctctgggcatgaaacacatgcctaagacggtggaggagtctcttctt
ggtgaccacagtgaccagtggattgacacagactgccccgaggccaagagattgaaggtg
gaggagcccagcatgatgtcggacagtgacgacccagtggactcccgacagtggacacag
caccatctggccgccgccgacatccgcatgcccacctctatggcactcacgcctccccag
ggagagttcgacggcgactagttcgacggcgactgcatggacgttaatgtccgaggacct
gacggcttcaccccgctcatgctggcgtcgttctgtggcggcctggaacccgaggtggca
gaggaggaggaggaagagtcgtcggccaacatcatctcggacctcatctaccagggcgcc
tcactggccgcccagacggaccgcactggcgagacggccctgcacctggctgcccgttac
gcccgtgctgacgccgctaagaggctgctggacgccggagcggatgctaatgcacaggac
aacaccggacgcacgccgctgcacgcagctgtggctgctgatgcccaaggagtattccag
atcctgatccgtaaccgtgccactgacctagacgcccgcatgtacgacggctccactgcc
ctcatcctggctgcccgcctggcagtggagggcatggtggaggagctcatcacatgccac
gccgatgtcaatgccgtcgacgagctgggtaaatctgccctgcactgggctgctgcggtc
aataacgtggaggccaccatggccttgctgaagaacggagccaacaaagatatgcaagat
ctgaaggaggagactcctctgttcctggcggcgcgtgagggcagctgtgaggcggtcaag
gtgctcctggcccacttcgccaaccgcgagatcaccgaccacatggaccggctgccgcgc
gacatcgcccaggagcgcatgcaccacgacatcgtccagctgctggacgagtacaacacg
gtacgcagcccgcagggccacagcgccgctgcccaccacctggcggcggccgccgccgcg
ggtcacacgctctcgccactcatgtgcccaccgagcagcttcatgtccggcctcaagacc
acgccgcagggcaagaagagccggcgcccaggcgccaagggctcaggcggcatggccggc
cagcacggcggcagcatcagcctgaaggagtcggccaaggcgcgcaacaagaagctgacg
ctggacatgcagagcgcactgctggagagctcggtgactctgtcgccggtcgactcgctg
gactcgccacacggcggcgccagcaacgccggctacatgaccaaccccacctcgccggtg
gccatgccctcgccgggcatgttccacacgtccatgtcggtgcccggcacgcccatggtg
cacgccggcatgctggacggcagcggcgggcccttcgccgtctccctggcgcagctgaac
gacctgagcggcggaggtgccgacggcgggctctccatgcaggcccgcgtctccatggcg
tcggcggtggcggcggccaaccagcacagctacgtgctgaactcgggccagctgggcatg
agcatgggcatggtgaaccccgtgagcgtgcccttcgactggcacagccgcatgacgccc
tcctcgcagtgcggcccggtggtcagcatggtgcaccccgtcagcagtcaggccagcctg
atgccgcccacgcccaccatgccccagggcggcctgctcatgcaccagcccatgttccgc
ggcggtcagcccaccatgctgcagcccacgctcgtctcctccacccccaccagcatcagc
cccgtcaagctggcctccatcgccgagcaacagcagccgcagcagctccacagccactcc
ctggcacgcatgggtacctcctcccctcccaccccccagcagagccagcccccaccggcc
ttctaccagcaggctccgcagcagccccagcaggccccccagcccacacaggcccaggca
gcagcagcagcggcggcggcccagcccggaggcagcggtacggaggactacccgacgccg
ccctcgcagcacagctacacctccgccatggatgccacgcctaagcattacctgcacctg
cccagcgagcacccctacctgaccccctcgccagagtcgcctgagccctggtccagcccc
tccccgcagtgcgtgtccgactggtccgagtccaccccgagtccggccgtgtcgggccca
gcgcagacccagatcccccacgtccaggagtccaacgggaagatgcaggtgttcgcgtga
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