Alosa sapidissima (American shad): 121705560
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Entry
121705560 CDS
T11137
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
Organism
asad Alosa sapidissima (American shad)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-Nse
RING_XB3-XBAT31
PTCB-BRCT
zf-MIZ
RTT107_BRCT_5
zf-RING_10
zf-RING_6
zf-RING_4
zf-ANAPC11
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
121705560
NCBI-ProteinID:
XP_041942530
LinkDB
All DBs
Position
3:41190272..41238271
Genome browser
AA seq
1742 aa
AA seq
DB search
MVMAAPQAEEVKQRISAIWENLQCPICLDLMSVPVTTKCDHQFCKFCMQNLLDRGRRQET
NCPVCKTKVTKRSVQESSAFQKLVAGLQQLVEAYEFDTSTSYFTGLAKSRRPGSPEVWQN
TDECVDIETPEHDGIHGADGSAPSMTSSRAAKDAFAQLMDLGDSCSATSDSGLGHLPQAS
RLGALCSPVQQGVDLPSPAKREDNLPVEGDGLPLLVKGGHDVSAASGAPQQTGVAEGAEP
DRVVVHAKRQTRSSRVLVVKQQSGDSDEEVVLRRSSRSGKRRGLEVDRIMDDEPKNQKQI
LEIRSSLGRRRSLEVDRIVDGRQRSLEKVSEWLLRIPPEGPTDKEEEQQSTDLRQDNQSE
EEHSLRGSNSSWSIDSPANHVTNRPTNQREEGRRGLEERVFGAVYSRGRRTGGGQGKGRA
TPGRASTGLDQIHPDIGPTAMPAAPTPGATLEDLKVQAQRGKPGRKTRSGSLTPADFIKR
PCAVEGQEPNIAAEESAAQDPEEPRLEGSAHKPDVSGLNTHGSVPCEADPEPTLGLPPEK
CPTGLPPEKCPTGLPPEKSPTGLPPEKWPAETKGKSDERSLDGSAFEENVRTRGRRRARE
KMEDAWIDLDKTLSSDAPEREPRPWDARGKRPQKKPDERKQPKAARTLQLVSAGGKHCPL
EAQVSRAQVRRAPACDADAQIESYPSSGETRSPVARATRRSRKLVDLTNEVQGIPRRTRS
MTAKAPTTGHTNLDHTNPELSDPGQPEEDPSAVNANTRVNTPGHSPADGAEEQDASLRTG
AVLATVPIECHTNPERSVEEREQGDGTGVSRSPRNQPGPPPKRNGCVCEREMDSIEKMEV
VEASALSDSREESSAAVVPHTQTPIPSPRPLPAVNPVNSGSMLDAVNSGSMLDAVVPHSK
SPAEALVPFSLPGVSPQHSPAPLQRSPLQHSSAPLQHSPALLRRSPASAASVPAVAFQQE
PPAALENRSRGPASPKVVEEEEEGNNDSELDTELLLKSFRGSKRKSFHLGSPRHQNESPA
GATATETRPDTQPGTGPLGTGVNAGVFGAGSDVVQNYDAAAVLSCGSELIPPSDPGQGQH
SAEVPLAGCPGSGSLAPAPQEACGGGNKEDSGGRSPCWRKCNFPSPSGAHRGVLSAERAV
PKPAPSLLEPQHTSEQGQSFESSMTPDGLVPLNTDCSVPLDAEGSVPLDAEGSVALDAES
PDCVLLSTEAEGSAVEGGTDASQPLSAVRKRRGRKAQRLESSESELSSEDDELPSLQQIF
RPKASPQPISNQGRRSVNPPALPLDPDGPEEEASDCEVIPCSLETPPPSRHCPPQAERGT
AAAGEVREERAGPDEDHGAGPDDGAGPDEDQGAGPDEDHGSQDLFGTPVEDEGVPEVPAG
ETAEFSQYSSDIINTQQKAEMHAELQRLEQMMALVSEALKQKEAEPCTKAVQGASAEAAN
GNQGAGPKSSSLRSPKKQLSSEPDRQQGMCMRHEGSAEAAEAGLPTPPSRRPGTHSAMQH
PGTNAGQRSEVKGLPAGTPPRLRPLQLVLSGLSGPQQVEAKRFAKRMGSSVTPHVTSDTT
HVIIRTDDELVCERTLKYFQGIAHRTWVVSYLWVSECLRQEKLLNEAEFEVCGDVVNGRS
HHGPQKARCTQHSNLLMKGFEICFYGPFVGMSTGHMQEMVELCGGVVVEDLCHFSKNCSS
QLVIVQPDSESETNFKFRDLPGGDLVVSRGWLLDSIATYTLQDVHSYRPELRPFSPDPSP
PF
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggccgccccccaagcagaagaagtgaagcagcgtatctctgccatctgggag
aacctgcagtgccccatatgtttggatctgatgagcgtgcctgtgactacaaaatgtgat
caccagttctgcaagttctgcatgcagaacctgctggacagaggtagacggcaggagacc
aactgcccggtctgcaaaaccaaagtcacaaaacggagtgttcaggagagttctgcgttt
cagaagttggttgccgggctacagcagctggtggaggcctatgagtttgacaccagcacg
agctatttcactggtttggccaagagcaggagacctggcagccctgaggtctggcagaac
acggacgagtgtgtggacattgagaccccagagcatgatgggatacatggagctgacgga
agcgcaccctcaatgacgtcatctcgagcagctaaggatgcctttgcccagctgatggat
cttggagactcctgctcggctacgtcagacagcggcctcggacacctgccgcaagcctcc
aggttgggagctctgtgctcacctgtacagcaaggtgtggacttgccctcacctgcaaaa
agagaagacaacctgcctgttgagggagatggcctgcccctgctggtcaagggaggacat
gacgtgtctgccgcatccggggctcctcagcagacgggggtggcggagggggcggagcct
gacagggtcgtggtccacgcgaagagacagacccggtcttcgcgggtgctggttgtcaag
caacagtctggtgattctgatgaagaggtggttctgcgcaggtccagccgcagtggtaag
aggcggggcctggaagtggaccggatcatggacgacgaaccgaagaaccagaaacagatc
ctggagatccggagcagcctggggcggagacgcagcctagaagtggaccggatcgtggac
ggcaggcagaggagtctggagaaagtctcagaatggctgctgaggattccgccggaggga
ccaactgacaaggaggaagagcagcaaagcacagacctgagacaggacaaccaatcagag
gaagagcactcgctcagagggagcaattcctcctggtccatagacagcccagccaatcac
gtaacaaacaggccgaccaatcagagggaggaaggcaggaggggtttagaggagcgggtg
tttggggccgtgtacagcagggggcgccggactggaggagggcaggggaaagggagggcc
acacctgggagggcctccactggactggaccagattcacccagacatcgggcccacagcg
atgcccgccgctccaacacccggagccacactggaagatctgaaagtgcaggcccagcga
ggaaagccagggaggaagacgaggtctggctccctgacgcctgcagacttcatcaagagg
ccctgtgcggtggaggggcaggagcccaacatagctgccgaggagtctgctgcccaggac
cccgaggagccgaggctggagggatctgcccataagccagacgtgtcgggcctcaacaca
catggaagcgtcccttgtgaagcagatccagagccaacacttggattgcccccagagaag
tgccccactggattgcccccagagaagtgccccactggattgcccccagagaagagcccc
actggattgcccccagagaagtggcccgccgagaccaaggggaagagcgacgagcgctcg
ttggacgggtcagcgtttgaggagaacgtgaggacaaggggacgacggagagccagagag
aagatggaggacgcctggatcgacctggacaagaccctgagctccgatgcgccggagaga
gagcctaggccgtgggacgccaggggcaagaggccgcagaagaagcctgatgagcggaag
cagccaaaggcagccaggaccctgcagctggttagtgcaggggggaagcactgccccctg
gaggcgcaggtgagtcgggcgcaggtgagacgagcaccagcatgcgatgccgacgcccag
atcgagagctaccccagcagcggggagactcggagccccgtcgcccgggcgacacggcga
agcaggaagctcgtcgacttaactaatgaggtgcagggcatcccgagaaggacaaggtcc
atgactgctaaagcaccgacaacaggccacaccaatctagaccacaccaatccagagctg
tccgatccaggccaacctgaagaagatcccagcgctgtgaatgctaacacacgcgtgaac
acaccaggtcacagccctgcagatggcgctgaagagcaggacgcatcactgagaaccgga
gctgtattggccacagtaccgatagaatgccacactaacccagagcgctctgtggaggag
cgggaacagggggacggaaccggagtctcccgctccccacggaaccaacctggcccgcct
ccgaagcggaacgggtgtgtgtgtgagcgggagatggacagcattgagaagatggaggtg
gtggaggcatcagctttgagcgattccagggaggagtcgtccgcagcggtcgtcccacac
acacagaccccaatcccctcccccagaccactccctgcggtgaatccggtcaattctggg
agtatgctggatgctgtgaattctgggagtatgctggacgctgtggttccacattcgaaa
agccccgcagaggcgctcgttccgttctccctcccgggtgtttctccgcagcattctcct
gcccctctgcagcgttcccctctccagcattctagtgcccctctccagcattcccctgcc
ctcctgcggcgttctccagcctctgcggccagtgttccagcagtggcattccagcaggaa
cctccggccgctctggagaaccgctcaaggggaccagcgagtcccaaggtggtggaggag
gaggaggaggggaacaacgacagcgagctggacaccgagctgctgctgaagagcttccga
ggcagcaagaggaagtccttccacctgggctcacctcggcaccagaacgagagccctgcg
ggcgccacggcaacagagacgcggccagacacgcagcctggcactggtccgctggggaca
ggagtgaacgctggtgtgtttggggctggttcagatgtggttcagaactatgacgccgct
gcagttctctcctgtggcagtgaattgatccctccgtcggacccagggcaggggcaacac
agtgctgaagtgcccctggcggggtgtccggggtctgggagtctggcacctgcccctcag
gaggcctgtggggggggcaataaagaggactcaggggggaggagcccgtgctggaggaag
tgcaacttcccgagtccctctggggcgcatcgtggcgttctcagcgccgagcgtgccgtc
cccaaacctgccccgagtctgctggaaccccaacacacaagtgaacagggccaatcgttt
gagtcttccatgaccccagatggcctggtgccgctgaatacagactgttccgttcccctg
gacgcagaaggttccgttcccctggacgcagaaggttctgttgccctggacgcagagagt
cctgactgtgtcctgctgagtacagaggcggaaggctcagccgtggaggggggcacagac
gcctctcagcccctcagtgctgtgaggaagaggagggggaggaaggctcagcgtctggag
tcgtcggagtcggagctcagcagcgaggatgacgagctgccctccctccagcagatcttc
agaccgaaggcttcgccacagccaatcagcaatcaggggcggcgctctgtgaacccccca
gccctgcccctggacccggacggccctgaggaagaggcgtccgactgcgaggtcattccc
tgcagcctggagactccaccccccagcagacactgccccccacaggcagagaggggcact
gcagctgctggagaggtgcgggaggagcgagcagggcctgatgaagaccatggggcgggg
cctgacgatggggcggggcctgatgaagaccagggggcggggcctgatgaagatcacggc
tcccaggacctgtttggaactccagtggaggatgagggtgtccctgaggtgcctgcaggt
gagactgcagagttctctcaatactctagtgacatcatcaacacacagcaaaaggcggag
atgcacgcggagctgcagcgcttggagcagatgatggcgctcgtctctgaagcgcttaag
cagaaggaggcggagccatgtaccaaggcagtgcaaggggccagcgctgaggcagccaat
gggaaccaaggggcggggccaaaatccagctcactcaggtcccccaagaagcagctgtcc
agcgagccagaccgacagcaggggatgtgcatgaggcacgagggctctgctgaggcagct
gaggctggtctgcctacccccccctccaggcggcctgggacccactcagccatgcaacac
ccagggacaaacgcaggccagaggtcagaggtcaaagggttaccagcaggcactcctccc
agactccgcccactccagctagtcctgtcaggactaagtgggccacagcaggtggaggcg
aagaggttcgctaagaggatggggagcagcgtgaccccccacgtgacgtccgacactacc
cacgtcatcatcaggacagatgatgaactagtgtgtgagcgcacgctaaagtacttccag
ggcatcgcccacaggacatgggtcgtcagctacctctgggtctcagagtgtctcagacag
gagaagctgcttaatgaggcggagtttgaagtatgtggagatgtggtgaatgggcggagc
caccatgggcctcagaaagcacgctgcacccaacacagcaacttgctgatgaaaggattt
gagatctgtttctatggccccttcgttggaatgagcacaggtcacatgcaagagatggtt
gagctttgtggaggtgttgtggtggaagacctttgtcacttctccaaaaactgttcttcg
cagcttgtgattgtacagcctgattcagaatcagaaaccaacttcaaattcagagatttg
ccaggcggtgatctggtggtgagccgtggttggcttctggattccatagcaacctacaca
ctccaggacgtgcacagctatagaccagagcttcgccccttctcccctgacccctcccct
ccgttctga
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integrated database retrieval system
