Alosa sapidissima (American shad): 121705869
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Entry
121705869 CDS
T11137
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121705869 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121705869 (xab2)
03041 Spliceosome [BR:
asad03041
]
121705869 (xab2)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121705869 (xab2)
Spliceosome [BR:
asad03041
]
Complex B
Other components
Prp19-related factors
121705869 (xab2)
Complex C
121705869 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121705869
NCBI-ProteinID:
XP_041943099
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Position
3:3479506..3489534
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AA seq
849 aa
AA seq
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MPSLNGKSDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNASKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGRCITDPSFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRRSFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLHSVGRLDEAAVRLAAVVNDEHFVSKEGKSNYQLWHEMCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPHQIINTYTEAVQTVDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
FKVVDDLSGVWCEYGEMELRHENYDQALHILRKATAIPARKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHSR
DMCLRFADMEAKLGEIDRARAIYSYCSQICDPRITANFWQSWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATSNATGTVSDLAPGQGGVDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELTKQANPDEIDIDDEDEDDDQDQEPDEVQLEQKTVPS
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttgaacgggaaaagcgatgttatctttgaagaagatgatctcccatatgag
gaggagatcatcaggaatccctactctgtcaagtgctggatgcgctacatagagttcaaa
cagaatgcctcgaaatcagtgctcaacatgatctatgagcgagctttgaaagagctcccg
ggaagttataagctttggtacaactacttgagagagagaaggaaacaagtgaaaggaaga
tgcataacagacccatcatttgaggaggtcaacaactgccatgaaagagcactggttttc
atgcacaaaatgccaaggatttggctagattactgtcagttcctagtgtctcaatccaag
atcaccaggagtcgccgctcgtttgaccgagccttgagagccctgcccatcacccagcac
ccccgcatctggcccctgtacctacgcttcgccagaaacctgcccttgcctgagactgcc
atcagagtataccgccgctacctgaagctctccccagagaatacagaggaatacatcgat
tacctgcattcagtcggccgtctggacgaggcagctgtgcgtctagcggctgttgtgaat
gatgagcactttgtctccaaagagggcaagtctaactaccagctgtggcacgagatgtgt
gacctgatctcccagaacccagacaaggtgaactcgctcaacgtgggcgccatcatccga
ggtggcctcacgcgcttcacagaccagctgggaaagctctggtgctccctggctgattac
tacatccgcagtggccattttgagaaggcaagagacgtatatgaggaggccatccagaca
gtggtgaccgtgcgagacttcacccaggtgttcgacagctatgcccagtttgaggagagc
atgatcgctgccaaaatggagaccacttcagagatgggaaaggatgaagatgaggacatt
gacctggagctgaggctggcccgcttcgagcagctcatcacccgccgtccgctgctgctc
aacagtgtcctgctgagacagaacccacacaacgtgcacgagtggcacaagagggtcaag
ctgtacgaaggcaaaccccaccagatcatcaacacgtatactgaggcagtgcagacggtg
gaccctgtaaaggccacagggaagccacactccctctgggtctcctttgccaggttttac
gaagataacgaacaactagatgatgcacggaccatcttcgagaaggccaccaaggtgaac
ttcaaggtggtggacgacctgtcaggtgtgtggtgtgagtacggcgagatggagttgcga
cacgagaactacgaccaggcgctgcacatccttaggaaagccacagccattccggcaagg
aaagctgaatactttgatgcatcggagcctgtgcaaaatcgagtgtacaagtctcttaaa
gtctggtcgatgttggctgacttagaggagagcctgggcactttccagtctacaaagtct
gtttatgaccgcatcattgacctgcggatagccacccctcagatcattattaattatgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtatgaacgaggcatt
gccctcttcaagtggcccaatgtgtatgacatctggaacacgtatctgaccaagttcatc
gatcgctatggaggaaagaagctggagagagcgcgagacctatttgagcaagccctagat
ggctgccctgcaaagtttgccaaaaccatatatctcctgtacgccaagcttgaagaggag
tatggtcttgcgcgccacgcgatggctgtgtacgagagagccacacaagccgtggagact
gaggagcgccatcaaatgttcaacatctacatcaagagagctgctgagatctacggagtc
acgcacaccagggccatttaccagaaggccatagaggtccttcccgatgagcactccaga
gatatgtgtctgcgctttgctgacatggaggcaaagctgggcgagatcgaccgcgccaga
gccatctattcctactgctcccagatttgtgatcccaggatcacagctaatttctggcag
tcgtggaaggagtttgagattcgccatggtaacgaggacaccatccgcgagatgctgagg
atcaagcgaagcgtccaggccacgtacaacacgcaggtcaacttcatgtcctcgcagatg
ctcaaggccacctccaacgctaccggtacagtgtcggaccttgctcctggtcagggtgga
gtggacgatatgaagatgctggagcagaaggcccagcagctggctgcagaggctgaacaa
gacaagcccaaacccaaggagaagatcctcttcgtcaggagtgacacgtctcgcagcgaa
cttgcggaactgaccaaacaggccaatccagatgagattgacattgatgacgaggatgag
gatgacgatcaggatcaggagcctgatgaggtgcaactggagcagaagactgtcccctct
gctgtctttggaggtctgaaggatgattga
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