Alosa sapidissima (American shad): 121705919
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Entry
121705919 CDS
T11137
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
asad01001
]
121705919 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
asad04054
]
121705919 (ciita)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121705919 (ciita)
Protein kinases [BR:
asad01001
]
Serine/threonine kinases: Other
TAF1 family
121705919 (ciita)
Pattern recognition receptors [BR:
asad04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121705919 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_25
nSTAND3
ABC_tran
MMR_HSR1
AAA_22
TsaE
Motif
Other DBs
NCBI-GeneID:
121705919
NCBI-ProteinID:
XP_041943185
LinkDB
All DBs
Position
3:8073263..8108924
Genome browser
AA seq
1294 aa
AA seq
DB search
MYEDSVKVTFDQVLDQLRWVLQVASPWELHSLFQKMLETQVFPNYHYLSLSEEAHCLSES
AGAGDTDQEDLARRMALPMWQRWDTCQGILQSMFIQEADSSLEFTSTSCESGNFWDSWNV
DTIECNVKENIDLLNDEDVDGFDEESALVSLFSNTDCFLDHVSSDQDHGTQGDTEEVELT
LMETVCFPPVSESATEKGEAMLPPLLEQPDYFGHGMGPEKVHVTCPFTALPVTKDSDQAP
DTQKTAGNRSLHKRSRCRKSQSKEPDGAFPSKRPKRTKPTQKVKEIPSDNLGDTPGNFQS
VRRVVTLSSPQQFVPISPTAAIVPFANIANFNTATLLPSTGGAPTFQIIQTHSLSPTSPT
YILVPTTPQKQMHQIVPLSPISGTVAPELLLVSPGGSLSDSVNRSTPPEPITLSSPTRAI
GSLATPERGVASPGSSSSDRTTPGETVTISSPTTETNPRESADVVAANPQLEHVEEEPCY
VGRYLQHVKSCMRESCGELEKDRSMESHYVNVHLLQRKVLVKSGKHANKCLEKEMVILSD
AERKKATLTRKQVFADGQLRQKQVIALLGKPGAGKSAFIKRLCLDWAKGELLRFRYVFSL
NCKTLNLKRSNYSLKRLLFDLPTSLQCEDPEAVFKHMISAPKEVLIIFDSFEDFKDHEGL
LHSPATCTEAGGYSIKQLFSGLFLKHLLKGCTLLIAARPCGGLMPLLRKVDSILELCGFS
PVEIDLYTSLYFMDDAPHGARALTKMKLQKYIYSLCSNPLLCRYTCFLLDHLDNNKRFAL
PSTLTGLALRVLSLCLKQTSQAQGKETPDISQLCALAWESLSAHSTLVANEQLESTELRD
YGLASEMLTSHTVGNADGAGEMTGHSFSHALIQNLLASLHLVLSESVSDKALVNQTMSTS
RRRRLQCEWLGMMQQFTAGLLFQKSKLPECGIAHSTTTSGRRAKKKAVEAHLDSLKSGEM
APARLLELCHCVYETGSKKLAKQLVKNLPDTVSLCGAQLTPPDVYVLWYLLRDTKALKRQ
FCIDLQDTGITLSGLKELVGLNCITSYRAPLADTIAMWEEIQQSGELDLLRGAMNKLTLH
PFKATQEDHICNLTVLIRIHRERNLLCRDSALLEHDIPAIRQLEELDFELGPNIGPVIFP
KLAQILPTLGSLVHLDLEKNKIGDSGAELLADVLNSLLSLKKLNLSQNLIGDKGLEKLAP
ALAAMPSLQGLSLYNNLIAESGAERLALVLPEMRALIDLDVGFNNFTDVGAQKLSDSLKY
CPWMKSLGMWNHYIPYGILQHLHQQDKRIRIQHS
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggatagtgtgaaggtcacctttgaccaggtgctggaccagttgagatgggtg
ctgcaggtggcttcaccttgggagcttcactccctgtttcagaagatgttggagacacag
gtcttccccaattaccactacctgtcactgagcgaggaggcgcactgcctgtcggagagt
gccggtgccggcgatacggaccaggaggacctggcacgcagaatggccctgcccatgtgg
cagagatgggatacctgccaggggattttacagtcaatgtttatccaggaagcagactcc
agtttagaatttacctctacctcctgtgagtcaggtaacttttgggactcttggaacgtg
gacacaatagagtgtaacgttaaagagaacatagaccttctcaatgatgaggatgttgat
ggttttgatgaggagagcgccctcgtctctctcttcagcaatacagattgcttcctggat
catgtcagcagtgatcaagaccatggcactcaaggagacacagaagaggtggagttgacc
ttaatggagacagtctgtttccctccagtctcggaaagcgcaacagaaaaaggtgaggct
atgcttccaccactactagagcagccagactattttgggcacggcatgggaccagagaaa
gtgcatgtgacatgtccatttactgcattaccggtcaccaaagactctgatcaggccccg
gacacgcagaagactgcaggcaacagatcactgcacaaaaggtcaagatgtcgtaaatcc
caatccaaagaaccagatggtgccttcccatcaaaaaggcccaagagaaccaaacccaca
caaaaggtcaaagaaatcccatcagataatttgggagatactcctgggaactttcagtca
gtcagacgagtggtcaccttgtccagccctcaacagtttgttccgatcagtccgactgca
gccatagttcccttcgccaacattgctaactttaacacggccactctgcttccctctact
ggcggtgctccaacatttcagatcatccagacccattcactaagccctaccagccccact
tacattttggtacccacaaccccgcaaaagcagatgcaccagattgttcccctctcaccc
ataagtggtacggtggccccagagctcctgttggtcagcccagggggctcgttatcagac
agcgttaacagaagcacacctccagagcccattacactatcatctcccactagagccatt
ggttcattggctacccctgagcgaggggtggccagtcctggaagttcatcatcagacaga
accacacctggagaaactgtcaccatctcctctcctactacagaaactaaccctcgtgaa
tcagctgatgttgttgccgcaaatccccaacttgagcatgtggaagaggaaccctgttat
gttgggaggtacttgcagcatgtgaagtcatgcatgagagagtcctgtggtgagttggag
aaggacaggagcatggagtcccactacgtcaacgtccatctactccagaggaaggtgctg
gtcaagtctgggaagcacgccaacaagtgtctggagaaagagatggtcatcctcagcgat
gcggagcggaagaaggctacgctgaccaggaaacaggtgtttgccgacggccagctgagg
cagaagcaggtgatcgccctcctgggcaagcccggagcgggcaagagcgcgttcattaag
cggctctgcctcgactgggccaagggcgaactgctgcgctttcgctacgtcttctcgctc
aactgcaagaccttgaacctgaagcggtccaactacagtctgaagaggctgctctttgac
ctccccacctctctgcagtgcgaggaccccgaggccgtgttcaaacacatgatctccgct
cccaaagaggttctcattattttcgacagcttcgaggacttcaaggaccacgaggggctc
ctgcactcccctgccacatgcacggaggcaggcggctacagcatcaagcagctgttttca
ggcctcttcctgaaacacctgctgaaaggatgcacgctcctgattgctgccagaccatgt
ggcggcctaatgcccctgctgcgcaaagtggacagcattttggagctctgtggcttctct
cccgtggagattgacctgtatacctcactctatttcatggacgatgcaccgcatggtgcc
agagccctgaccaaaatgaagctccaaaagtacatttatagcctgtgctccaatcccctg
ctgtgccggtacacgtgcttcctacttgaccatttggacaacaacaagcgcttcgccttg
ccctcaactctcacaggcctggcgctgagagtgctctccctgtgccttaaacagacctcc
caagcgcagggcaaggagaccccagacatttcccagctgtgtgcgctagcatgggagtca
ctcagtgcgcacagcactcttgtggcgaatgagcagctagaatccacagaacttagggac
tatgggcttgccagcgaaatgctcacctctcacactgtgggcaatgcagacggagcgggt
gagatgaccggtcactctttctctcatgccctcatccaaaacctcctggcctccctgcac
ctggtcctgtcggagagcgtgagtgacaaggcactggtcaatcagaccatgagtaccagc
cggaggaggaggctgcagtgtgagtggctgggcatgatgcagcagttcaccgcgggcctc
ctgttccagaaaagcaagctccccgagtgtggcatcgcacactccaccaccacctctggc
agacgtgccaagaaaaaggcagtggaggcccacttggactccctcaagtccggggagatg
gctccagcaaggctcctggagctatgccactgcgtgtacgaaacgggcagcaagaagctc
gcgaagcagctggtgaagaacctccccgacacggtgagtctctgcggagctcagctgacc
ccaccggacgtctatgtgctttggtatctcctgcgggacaccaaggccctgaaaaggcag
ttctgcatcgatctgcaggacacaggcatcactctcagtggtctgaaagagcttgttgga
ctgaactgcatcacatcctacagggcacccttggcggataccattgccatgtgggaagag
atacagcagagtggggagttggatctactgaggggagccatgaacaagctcacccttcac
cccttcaaggcaacacaggaagatcacatctgcaatctgacagtgctcattcgtatccac
cgtgagaggaatttgctctgcagagattctgcattactggaacatgatataccagctatt
agacaactcgaggagcttgattttgagttgggtcccaatattggccctgtgatcttccca
aagctcgctcagatcttacccactctgggaagcctggtgcatttagatcttgagaaaaac
aagatcggtgattcgggagctgagctgcttgctgatgtgttgaattctttattgtcactg
aaaaagctgaatctgtctcagaacttaattggagataagggactggagaaacttgcgcca
gctcttgctgccatgccttcccttcaaggtctcagcttgtacaataacctgattgctgaa
agtggcgcagagagacttgctttggtccttccagagatgcgggccctgatagaccttgat
gttggcttcaacaacttcactgatgttggagcgcagaagctgagcgacagcctgaaatat
tgcccttggatgaagtctcttgggatgtggaaccattacataccatatggtatactccag
catctgcatcaacaggacaagaggataaggattcagcattcctag
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integrated database retrieval system
