KEGG   Alosa sapidissima (American shad): 121706076
Entry
121706076         CDS       T11137                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:asad03041]
    121706076 (smu1b)
Spliceosome [BR:asad03041]
 Complex B
  Other components
   Complex B specific factors
    121706076 (smu1b)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_EML LisH_TPL Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR75_1st Ge1_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_NWD2_C WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_VPS8 LisH_WDR26 Beta-prop_DCAF12 VPS8_N Beta-prop_IP5PC_F Beta-prop_WDR75_2nd Beta-prop_LRRK2 LisH DUF7165 Beta-prop_NOL10_N LisH_PAC1 LAGLIDADG_WhiA
Other DBs
NCBI-GeneID: 121706076
NCBI-ProteinID: XP_041943855
LinkDB
Position
1:complement(36891217..36900782)
AA seq 519 aa
MSLDVETTDVVRLIMQYLKENNLHRTLATLQEESTVYLHTVDSIDSFISDINNGHWDAVL
LAIQHLKLPCKILIDLYEQVVLELIELKEVGAARSMLWQTDPMIYLKQTEPDRYVHLENL
LTRPYFDPQEAYPDGSSKEKRRMAVAHALAAEVSVVPPSRLLGLLSQVRSVKYQQTQDML
HPGMAIDMTQCNGTVCNGVKDSEEEHVPAQLICHIQFGPKSHVECARFSPDGQYLITGSV
DGFVEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCLAFSHDSEMLASGAQDGKIKVWRIQ
SGQCLRRFERAHSKGVTCLNFCKDNGQLLSASFDQTIRIHLLKSGKTLKELRGHTSFVSE
ASFTKDGNHIISASSDGIIKIWNVKTCECTSTFKSPGSSAGVDVMVNNMFLLPKNPEQFV
VCNRSSTVVIMNMKGQIVRSFSSGKREGGDFVCCTLSPRGKWVYCVGEDLVLYCFSTLTG
RLESSLTVHDKDVIGITHHPHQDILATYSEDGLLKLWRP
NT seq 1560 nt   +upstreamnt  +downstreamnt
atgtcccttgatgttgaaacgacggacgtcgtccgtctaatcatgcaatacctgaaagag
aacaacctgcaccgcacgctggctacgctgcaggaggagagtactgtataccttcacaca
gtggatagcattgatagcttcatctcagacataaacaacggccactgggatgcagtgtta
ctggctatacaacatctcaagctaccctgcaaaattctcattgacttgtatgagcaggtg
gttttggaacttatcgagctgaaagaagttggagcagcccggtcaatgctgtggcaaaca
gaccccatgatttacctgaaacagacagagccggacagatatgtccacctggagaacctt
ttaacacgtccgtactttgaccctcaggaggcgtacccagatggcagtagcaaggagaag
aggaggatggcagttgcccacgccttggcagcagaggtcagcgtggtccctccctcacgc
ctcttgggacttctttcacaggtgcgttccgtgaaataccagcagactcaggacatgctg
catcctggcatggctattgacatgacacagtgcaatggaactgtctgcaacggagtgaag
gacagcgaggaggagcacgtccctgcacagctcatttgccacattcagtttggaccaaag
tctcatgtggagtgcgcgcggttctctcctgatggtcagtatctcatcaccggttctgtt
gacggctttgttgaggtgtggaacttcaccactggaaagatccggaaggatctgaagtat
caggcccaggacaacttcatgatgatggatgatgcagtcttatgtttggccttcagccac
gattctgagatgttagcgtctggggcacaggatggcaagatcaaggtgtggaggattcag
agcgggcagtgtctgcgaagatttgagcgcgctcacagcaaaggagtgacttgtctcaac
ttctgcaaggacaacggtcaactactcagtgcttcttttgatcagaccatcaggattcat
ttgctgaaatcgggcaagacgctgaaggagttgaggggccacacgtcctttgtcagtgaa
gcatcatttacaaaggatggcaaccacatcatcagtgcgtcctcagatggcatcatcaag
atttggaatgtgaagacctgcgaatgcaccagcacatttaaatcgccaggctcgtccgca
ggagtagacgtcatggtcaacaacatgttcctgctgcccaagaaccccgagcagtttgtg
gtgtgtaaccgctccagcacggtggtgatcatgaacatgaaaggacagattgtgaggagt
tttagctcgggtaaaagagaaggcggggactttgtgtgctgcacgttgtctccgcgtggc
aagtgggtctactgtgtgggcgaggacctggtgctgtactgcttcagcacgctcaccggc
aggctggagagcagcctcacggttcatgataaagacgtgatcggcataactcatcaccct
catcaggacatacttgctacctacagtgaggatggcctactgaaactgtggaggccctaa

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