Alosa sapidissima (American shad): 121706453
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Entry
121706453 CDS
T11137
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121706453 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121706453 (ndc1)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121706453 (ndc1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
121706453
NCBI-ProteinID:
XP_041944134
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All DBs
Position
1:41466984..41476300
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AA seq
676 aa
AA seq
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MFSLKHSCWFIRKVVCWRAVASIAWSVLLLPVTTAIFVFLSRFSLLHPIQWISDSLALLT
ASSTIFSIVLLSGVVLVIGFFNLESYTVVPSIPCTRIALLGKVLHPRQCIHSVVHAAVGM
LVSWCAAITIGGRYRALGSPCLQSESKDAGQMCLNEYHLLLLLSGAFMGYSHSLLGVVHN
MNYVSFPAIQQYKYLRFKGSLSLVVKCSAVQSMYALRNYLVLYFFFGYAPKTWICRTLNL
QEDGSLHALDTLAGLLDFSLLYHLWIAGTFLLLTWYITVLLFRIYVSEMHSFPVQPSFAE
EADGCLPKVLLCKEPAIMKFLALQDLALLSQHSVMRRLEVFSLSQPGGHPHNWNAISKEC
LSLLTELTQRLVAHHDAVASNGRAKSQSSSSTETKSGSWGSVSSGATDLPKTPLPSHILK
TPGSVFLRSSVGTLHSPLTAPFTPDLDSPFSSPSIRRLTAPQEPSSPWFGTVQSPHVMRG
PKLWSASTDSQSNGSTTASPAPAAAPGPSPPPADHKPSFLSQWLQNRKEQVKGFMAKRVL
VMYLFTKLPEATSQALFADSQAHIWALEGLSHLVVASYSEDRFGVVQTTLPSILSTMLVL
QEAVDRHFKLPHASSKPLRSTCSMGESTYKTLRFAMRAALKTAIYRITNTFGEHLHAVQM
STDHRKRLQQFLEYKE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgttttctttaaaacacagctgttggtttattcgtaaggtggtatgttggagagctgta
gccagcattgcttggtctgtgctgctgttgccagtcaccacagctatttttgtgttcttg
agtagattcagtctactccatccgattcagtggatatcggattcacttgctcttctgact
gcttcaagtaccattttctctatcgttctactctctggagttgtgttggtgattgggttt
ttcaacctcgaatcttacacagttgtcccttccatcccttgcacaaggattgcccttctg
gggaaggtgctccaccctcggcaatgtatacactctgttgtgcacgcagcggtggggatg
ctggtgtcttggtgtgccgctatcaccattgggggcaggtaccgagccttgggctccccc
tgccttcagtccgagagtaaagatgctggccagatgtgtctgaatgagtaccatctgctc
ctgttgctgtctggagcctttatgggatacagccacagtctccttggggttgtacacaac
atgaattatgtgtctttccctgccatacagcaatataaatacctgcgtttcaaaggctcc
ctgtctcttgtggtgaaatgcagtgctgtgcaatccatgtatgcacttaggaattactta
gttctatacttcttttttggatatgcacctaaaacgtggatctgcagaactctcaatcta
caggaagatgggtctcttcacgctctggacactctggctggactgctggacttttctttg
ctgtaccatctgtggattgctgggacattcctgctgctaacctggtacatcaccgtcctg
ctcttcaggatctatgtctcagagatgcacagttttccagtccagccttcgtttgcggag
gaagctgatggctgtctgcccaaagtcttactctgcaaagagccagccatcatgaagttc
ttagccttgcaagacctggctcttctgtcccagcactcagtcatgaggaggctggaggtg
ttcagtcttagtcagccaggtggccaccctcacaactggaatgccatcagtaaagagtgc
ctgtctctgctgactgagctgactcagaggctggtggctcaccacgatgcagtagcctcc
aatggccgtgccaagtcccagtccagcagcagcaccgagaccaagtctggatcgtggggc
tcagtgtcatcgggggccacggaccttccgaagacgcctcttcccagccacatcctgaag
accccgggctccgtgttcctgcgctcctccgtggggacgctgcacagccccctgactgcc
cccttcacccccgacctggacagccccttttcttccccttccatccggcgtctgaccgcg
ccccaggagcccagctcaccctggttcggcaccgtgcagagcccccatgtcatgaggggt
cccaagctctggagcgcctcaacagattctcagagtaatggcagcaccactgccagtcct
gctcctgctgctgctcctggccccagtccccctccagccgatcacaaacccagtttcctc
tcccagtggcttcagaaccgcaaggaacaggtgaaaggtttcatggcaaagagggtgctg
gttatgtatttatttaccaagcttccagaggcaacgagccaagctttgtttgccgacagc
caagctcacatttgggctttagaagggttgtcccacctggtggtggcgtcctattcagag
gatcgcttcggggttgtgcagactacactaccaagtattcttagcaccatgctggtgctg
caagaggcagtggacagacacttcaagctgccccacgcatctagcaagcctctgaggtcc
acctgcagcatgggagagtccacctacaagaccctgcgctttgctatgagggctgcactc
aaaaccgccatatacaggataaccaacacctttggggagcacttacatgctgtgcagatg
tccactgatcacagaaaaaggctgcagcagttcctcgagtacaaagaataa
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