Alosa sapidissima (American shad): 121706685
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Entry
121706685 CDS
T11137
Name
(RefSeq) retinoic acid receptor gamma-like isoform X1
KO
K08529
retinoic acid receptor gamma
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121706685
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121706685
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121706685
Nuclear receptors [BR:
asad03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
121706685
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
RNA_pol_3_Rpc31
DUF4746
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
121706685
NCBI-ProteinID:
XP_041944557
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Position
4:25352966..25419191
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AA seq
499 aa
AA seq
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MATNRERPVGHMTGFYPFAFSSMRNHTPFDLLANSSLFGRFGADLPKEMAALSVETQSTS
SEEMVPSSPSPPPPPRIYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD
KNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDIKEEVVLPESYELSGELEE
LVNKVSKAHQETFPSLGQLGKYTTNSSADTRVQLDLGLWDKFSELSTKCIIKIVEFAKRL
PGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLT
DLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPERVDRLQEPLLEALKLYARRR
RPNKPHMFPRMLMKVTDLRGISTKGAERAVTLKTEIPGPMPPLIREMLENPEVFEEAAEA
ARAAESASGASTASASTQPPPAIQAIKREREEEESTLEEEDDDEEDGDEDRERGGDSDDE
AWGLTPPDPTRKGATGRAQ
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaacagggagcggccagtgggccacatgacggggttctacccgttcgctttc
agctccatgcgaaaccacaccccctttgacctgctggccaatagcagcctgtttggaaga
tttggggctgacctccccaaagagatggcagcactttcggtggagacgcagagcaccagt
tcagaggagatggtccccagctccccctcccctccccctccaccgcgcatctacaagcca
tgcttcgtgtgccaggacaaatcctccggctaccattatggagtcagctcctgcgaggga
tgcaagggcttcttccggcgcagcatccagaagaacatggtgtacacctgccaccgagac
aagaactgccagatcaacaaggtgacgcgcaaccgctgccagtactgccggctgcagaag
tgcttcgaggtcggcatgtccaaagaagctgtgaggaatgacaggaataagaagaagaag
gacattaaggaggaggtggtgcttccggagagctatgagttgagtggagaactggaggag
ctggtcaacaaagttagcaaggcccaccaggagactttcccctcactcggccagctgggc
aaatacactactaactctagtgcggacaccagagtgcagctggatctggggctgtgggac
aagttcagtgagctctccaccaagtgcataatcaagatcgtagagtttgccaaacgcttg
cccggattcaccactctcaccatcgctgatcaaatcaccctgctcaaatcagcatgccta
gatatcctgatgctgcgtatctgcacgcgctacactccagagcaggacaccatgaccttc
tcagatgggctaacgctcaaccgcacacaaatgcacaacgctggcttcggccccctcact
gacctagtgtttgcatttgccgggcaactgctgcccctggagatggacgacacagagaca
ggcctcctcagtgccatctgcctgatctgtggagaccgtatggacctggaggagccagag
cgtgtcgaccggctgcaagaaccgctgctagaggcactgaagctgtacgctcgtcgccgc
cgccccaacaaaccccacatgttcccacgcatgctcatgaaggttactgacctcagaggc
atcagcaccaaaggagccgagcgagccgtcacgctgaagacggagatccccggccccatg
ccgcctctaatccgcgagatgctggagaacccagaagtgttcgaggaggccgcagaggcc
gccagggcggctgagagtgccagcggggcctccactgcctcagcctccacccagccaccc
cccgccatccaggccatcaagcgcgagcgcgaggaagaggaatcgaccctggaggaggag
gacgatgatgaagaggatggggacgaggacagagagcgaggaggggacagcgacgacgag
gcctggggcctaacgccgcctgaccccacgaggaaaggcgccacaggtcgagcccagtga
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