Alosa sapidissima (American shad): 121706692
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Entry
121706692 CDS
T11137
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121706692 (tmf1)
Membrane trafficking [BR:
asad04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121706692 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
DivIC
Motif
Other DBs
NCBI-GeneID:
121706692
NCBI-ProteinID:
XP_041944574
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All DBs
Position
4:14380788..14391544
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AA seq
1151 aa
AA seq
DB search
MSWFNASQLSSFAKQALTTAQKSIDRVLDIKEDDPWGDTVVATYDDLPGKPVSAGGWGMN
QWDTPVEECTKSTPPSSEAITTPVTRTVVDETETFFSAFLSPGDLQTVKSSQVVSVPPIK
SSRGGPQEKTEKKDTDEVDSPQQGEATEDRQESEEDADVDVDVDLDNESIHAEPRNSSAG
LDVVLLELEPAVSVELTVPEQTPASENQNALDNIEVAAGEAAPDKPQSSSESELPLDHLE
SPEAPEPKSPSKASLVPPKEILLESKDAKGEDRQSDTPSPPVSAFSSGTSTTSDIEVLDH
ESVLSESSASSRQETAEAKAGLHLMQGSFQLLSASACADYPRLGEDYPKLTESCGSSSDA
FERIDSFSVQSLDSRSVSEVNSDDELPGGRTLASVTSPSSHTPPASLLVPAQNKEEGEEG
EEGEERRHDETMTEQSLDEMEMESEMEESGRSATPVNCEQPEEEPESDVTLSGLSMDASE
PRTPPITEEMRGASTSQILELQKIIDDLTSRLETRETQLLSVSKDKARLEEECDNLKDEI
IGLREETTTVQSLQDEFTHRIAEAERKAQLACKERDIAKKEIKGLREELASRFNSNETLE
LIRDKEEQIRGLLEEGEKLSKQQLQHSNIIKKLRVKEKESDLKITKQTKQLKEQEEELKH
LQQVLDGKEEVEKQHRDNIKKLNAVVERQERESTKVQSELEEFLEKNRSLQAALDNSYKE
LAELHKANASKDSVAQELALSQQEQAREELERALERATEEARMQQEALANQVADLRLALQ
RAEQQQARKEDYLREEISELQQRLQAAETRNQELSHSVTSATRPLLRQIENLQASLGGQT
ESWEKLEKSISDRLVDAEAQLAVAVEKERAATDELHGLKAQVASLESQSSLLRQEKGRLQ
GLLEAEKSRRERLEDDISREHVELTNLRGEHSRALEEAKKEKLLMTNQLEMEKMKVEQEK
KKCYLAQEALKEKERKAMVMSVSEPPASSPSLSRSSSISGPDHAGLHSSFLAQQEDSLDH
SFGTMSISGSNLYEVARLGGGSSIMENLQSQLKLREGEIAQLQLEIASLERSRAVMAEEL
VRLTNQNDELEEKVKEIPRLRINLKDLEQRHNTILQMYGEKAEEAEELRLDLEDVKNMYK
TQIDELLKNQK
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgagttggtttaacgcgtcgcagctgtccagttttgctaaacaggcgctaacaacagca
cagaagtctatcgatcgtgtgttggacattaaagaagacgatccatggggtgatacggtc
gttgctacgtatgatgatttacctggcaaacctgtctcagctggggggtgggggatgaac
cagtgggacacccctgttgaggaatgcaccaagtcaacccctccctcgtccgaggccatc
acgaccccggtgacccgcacggtggtggacgaaacagaaactttcttcagtgccttcctc
tctccaggagatctgcagactgtcaagagctcacaggtggtgtctgtcccgccaattaaa
tcgagccgaggaggaccacaggagaagacggaaaagaaagacactgacgaagtggactcc
ccacagcaaggcgaggccacagaggatcgacaggagagcgaggaagacgctgacgtggat
gttgacgtcgacttggacaatgagtcgattcatgcggagcctagaaattcatccgcaggc
ctcgatgtggttttactggagctggaacctgctgtctctgtcgaattgactgtgccagag
caaacacctgccagtgaaaatcagaacgcgcttgacaatatagaggtggcagctggcgaa
gcagcaccagacaagcctcaaagcagttctgagtccgagctgcccctggatcacctggag
tcgcccgaagccccagagcccaagagcccttctaaagcatcgcttgtgccccctaaggag
atcctgctggaatctaaagacgccaagggggaggaccggcagagcgataccccgtctccg
ccggtcagcgctttctcatcgggcacgtccaccaccagcgacatcgaggtgctggaccac
gagagcgtgctgagcgagagctcggccagctcgcgtcaggagacggcggaggccaaagca
ggcctgcacctcatgcagggctccttccagctgctgagcgcatcggcctgcgccgactac
ccgcgcctcggagaagactaccccaaactgacggagagctgcggttcgtcctcggacgcc
ttcgaacgcatcgactccttcagcgtgcagtcgctggacagccgcagcgtcagcgaggtg
aactcggacgatgagctcccgggcggccgcacgctggcctcagtcacgtcgccgtcctcg
cacacgccccccgcatcactcttggtcccagcgcagaacaaagaggaaggagaggaagga
gaggagggagaggagcgcaggcatgacgaaacgatgacggagcagtctctggatgagatg
gagatggagagcgagatggaggagagcggccgtagtgccacgccagtgaactgcgagcag
cctgaggaggagccggagtccgacgtcacactgtctggtctgagcatggacgccagtgag
cccaggacgccgcccataacagaggaaatgagaggagcctccacctctcagatcctggag
ctgcagaagatcattgacgacctcacaagcagacttgaaacaagggagacgcagctgttg
tcagtcagtaaagacaaggccagactggaagaggagtgtgataaccttaaagatgagata
atcggcttacgggaggaaacgactactgtccaatctcttcaagatgaattcacacatcgc
attgctgaagctgagaggaaagcccaactggcctgtaaagagagagacattgccaagaag
gaaattaagggcctcagagaggagctggccagcaggttcaactccaatgagaccctggaa
ctgatcagagacaaggaagaacagatcagaggccttctggaggaaggtgaaaagttgtcc
aagcagcagttgcagcattctaacatcatcaagaagctgcgtgtgaaagagaaggagagt
gacttgaaaatcaccaaacagaccaagcaactcaaggagcaggaagaggaacttaaacac
ctacaacaggttctagatgggaaagaggaggtggagaagcagcacagggataacatcaag
aagctgaacgcggtggtggagcggcaggagcgcgagtcgaccaaggtgcagagcgaactg
gaggagttcctggagaagaaccgcagtctacaggcagcgctggacaactcttacaaggag
cttgcggagctgcacaaggccaacgcctccaaggacagtgtggcccaggagctggcgctc
agccagcaggagcaggccagagaggagctggagcgggcactggagcgcgccaccgaggag
gcccgtatgcagcaggaggccctggccaaccaggtggctgatctgcggctggcactgcag
agagctgagcagcagcaggccaggaaggaggactacctcagggaggagatcagcgagctg
cagcagagactgcaagcagccgaaaccaggaaccaggaactgagtcatagtgtcacctcg
gccacacggccccttcttcgtcaaattgagaacctgcaggcttcacttgggggtcaaacg
gaatcgtgggagaagctggagaagagcatctctgataggctggtggacgcagaggcgcag
ctcgccgtagcagtggagaaggagcgtgccgcgacggacgagctgcatggcctcaaagct
caagtggcctcgctggaatcccagagttccctcctgcgtcaggagaagggccgtctacag
ggcctcctggaggcggagaagagccggagggagaggctggaggatgacatcagcagggag
cacgtggagttgacgaatctgaggggggagcactcgcgggctctggaagaggccaagaaa
gagaagctgctaatgaccaatcagctggagatggagaagatgaaggttgagcaggagaag
aaaaaatgctaccttgcacaggaggccctcaaggagaaggagaggaaggccatggtgatg
tctgtgagcgagccccctgcctcatccccgtcactgtcccgctccagctccatcagtggg
ccggaccacgccggcctccactcctcatttctggctcagcaggaggactctctggaccac
tcctttggcaccatgtccatcagcgggagcaatctgtatgaagtggcccgactcggagga
ggctccagcatcatggagaacctgcagtcacagctcaaactcagagaaggcgagattgca
cagcttcagttggagattgccagtctggagaggagccgtgcagtgatggcagaggagctg
gtccggctgaccaatcagaacgacgagttggaggagaaggtgaaagagattcccaggcta
cggattaatctcaaggatctagagcagaggcacaacaccattttgcagatgtacggagag
aaggcagaagaggctgaggaactgcgcctggacctggaggatgtgaagaacatgtacaaa
acccagattgacgagctgctgaaaaatcaaaaatag
DBGET
integrated database retrieval system
