Alosa sapidissima (American shad): 121706817
Help
Entry
121706817 CDS
T11137
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121706817 (chd6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121706817 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
HDA2-3
ResIII
DEAD
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
121706817
NCBI-ProteinID:
XP_041944793
LinkDB
All DBs
Position
4:10865277..10904983
Genome browser
AA seq
3047 aa
AA seq
DB search
MKIQKKEKQMSAAHLIKHTPASAASSATDQNAQITFPVGPQGKEQIRVLGGQTNHCMAHT
KHSGTWEGGPGTGRHACPPASPGNSEEDDGGGGTRVKKKRKKKDKKGSGTGQKPERESES
KPKKKKELKELKEILPRKSKAPKEPKGLKEAKESKKFKELKSPKEPKKGRKGREAKAKPT
VDCKATSSPPRQRGRKPKEQGVVPPEKKKKGKRKSEVQQEALESDDTASLTAVAMGGEES
SDPLDSTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGTGRMGALSASTLAWQAEEPP
EDEANIIEKILSVRTVKKEAEPGKPPEEYEEFYVKYRNFSYLHCKWATLEELEKDPRIHQ
KIKRFRNKQAQMKHIFSEPDEDLFNPDYIEVDRVLEVAHTTDTETGEEVTHYLVKWCSLS
YEESTWELQEDVDPVKIREFENLKKIPDLKYVERPQPDKWQKLENSRDYRNGNELREYQL
EGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLFEIFSMGIRGPFLIIAPLSTITNWER
EFRTWTEINVIVYHGSQISRQMILQYEMYHRDEHGNSVSGLFKFHGVITTFEMIMADCPE
LKKIHWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEP
LQFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNM
QKKYYRAILEKNFTFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFKKTH
SPDASDFQLQAMIQSSGKLVLIDKLLPRLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTY
ERIDGRVRGNLRQAAIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND
LQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQ
LSKLEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASF
VSSGNRTDISLDDPNFWQKWAKIAELEIDSKEEKESLVIDTPRVRKQTRHYNSFEDDELM
EFSELDSDSEERPCRTRRLNDRNRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLA
ERDMELMCRALLVYCVRHYKGDEKIKSFIWDLITPTKDGQNEALQNHSGLSAPVPRGRKG
KKLKNQLCLPELNNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGE
AATQALEGISASKLEVALPDIDYIEIPAGWWDAEADKSLLIGVHKHGYERYNAMRADPDL
CFLERVGMPDVMALSAEQSGSEVPADANDSVGKTEDMKDETESKMEGGEDKEESKDDTSS
VTDTSEKQENVVSSELGVPEASEQGRLLWPAGSALTARLRRLITTYQRYNRREPLRHEFL
MLDGASHVPWQLGEDLRRCAVEPDPLFLEWQRRWTRREQADFYRTVSSFGVMFDPEKKVF
DWTQFRSLARLERKTDESLERYFYNFVSMCRTACRLPPRKDEGPIDHALFVEPITEERAA
RTLYRIELLRKIREQVLRHPLLGQRLQLCQPSLYLPVWWECGKHDRDLLIGAAKHGLSRT
DYYILNDPQLSFLEAHRNYVRKENHGYPVPASMSGMPHRHCCLYDAGLSHCHSPQPPEYH
TPPSHHAHGHPHIHGPVHHPTEVVAGDPVGSLAMSGGGGPREGFLDCPPLEESLELASLQ
HDGLAADSLHGKPSKEAFNGFPFNSASGGQSMLNSYGVQGELSGTQGDIADSIAGKLRSD
VLVGEQGSSEETGLMAPSVELDELQTPWESSDHAAAAHMFNEADPILGAPALESEFLDSS
DAPGDGQVDTALNDCLSMPSSDSQSNPVDPLPSSFMLFKELSEAEPSVEQTDLSASPPPE
YAPTPLSLGDMSLSHTGPTEEPDEKLSDSDVTRSAPSPVDVAGSVTFEFDKEELSQDSHS
LTGTTQGPDEASLDPSEGPPEEALGETSTEPLSEASVPEHNEENLAEPCEEPMEESMLKG
LSDVPPEEPWESHPQEKQPGEETLQVPSEEPAEEEPYETPSRSLHEVHSEEASSERLSEP
VIGSSLSDPTLSSVGPTSSPLPCASPSLSVPLSVPPTSPEPSTAVHIKQELLLEPTTAEI
KPDPEALEPDSTTLTPRLEQTEMLEAKEEIKQERVKTPALMVDSYVEAPRYAPQMSVCEM
PDSLHDVREPTIAQLLQEKALYSFSGWPKDRVIINRLDSICHAILKGKWPSSSQYESHST
LANTCAPNSGHQRAAFMPARVQPSQSLNFNMPTVSRMPKERLMAPPFLSDLKQPGVRPRF
EFEAEVLSKPCHTGEKIQVGIPHRGGPLLLNGWQEAAMDLSKPPGELGIGGETGPVGHIT
HTVHTPPPPPPSHPPPPQHKLPTLSSMQGSLGLDMAGILQAGLIHPVTGQIVNGSLRRDD
FMRRRRGRRRNVDGPDISFMRSHGLSVQEQQVGLAFRLEPRPDSISHSTVSSTTTTQSDR
SSAPPGPSGPSSSLGLPPPPPPESLGIDREAANKGLMEWLRQNPNYMEIPHFASSQNAAI
LHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGRRLGGAMAPAIKELSRWLDA
NSEYCVAPDWAEVVKHSGFLPEGKFTRILTEPVSRDPGPRRRGRRPRSEMVKAGPILPES
PSNMGPLFMNGGLIGSMDLVSLQNLRNVPGIPLTGLMGFPHGFAAVPAGAGEDAKNGISM
LPMMLHGMAAVQPPMFSVSGLMSQPSSSSPSSSSPTTTLSTSAGPTVITSTSAALSPSSG
PSPVTSGPSPPAESCSSTTASGLDKRKDDRAPVEGKPPGPPVGHATATVSSTTPTSVSAG
SISSTGSHLTFNPFLIPGMSHGLLYPHMFLPHGGIMALPGMPAADSSGSPKRKRKKLRED
GAPEGGSAGSPPMDSTPARGPSDAPQIRADADNDAPSEEGPQNQETDTNSKGHEDHSNAL
PPEAPIECSSKEEERQTEEKEEQDVEGKDKRLPETERQEYEPREDSQ
NT seq
9144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacaaaagaaggagaagcagatgtccgctgcccacttaataaagcacactcca
gcttctgcagcctctagtgccactgaccaaaacgcacaaatcacgtttcccgtaggccca
cagggcaaagagcaaatccgggttctgggtgggcagaccaatcactgcatggcccacaca
aagcactctgggacatgggaggggggcccgggaacaggcaggcacgcctgcccgccggca
tcgcctggcaacagcgaggaggacgatggagggggtggcacccgggtgaagaagaaacga
aagaaaaaagacaagaagggctcaggcacggggcagaagccggaacgagagagcgaatcc
aaaccaaagaaaaagaaggagctgaaagagctgaaggagatattgcccaggaagtcgaaa
gcacccaaggagcccaagggtctcaaggaggccaaggagtccaagaagttcaaggagctg
aagtcaccaaaagagcctaaaaaggggagaaagggtcgggaagccaaggccaagcccact
gtagactgcaaggccacatcatctcctcccagacagcgaggcagaaagcccaaagagcag
ggtgtggtcccgccagagaagaagaagaaggggaagaggaaaagcgaggtccagcaggag
gcgttagagagcgatgacacagcctccctgactgcagtggccatggggggcgaggaaagc
agcgacccgctggacagcacgaagcggcgctcaggacgtcaggtgaagcgcaggaagtat
aacgaggacctggatttcaaggttgtggacgacgacggggaaaccatcgctgtgttgggc
acgggccgcatgggagccctgtctgcctccacactggcctggcaagcagaggagccgcct
gaagacgaggctaacatcattgagaaaatcctctctgtgcgaactgtgaagaaggaggca
gaaccggggaagccacctgaggagtatgaggaattctatgtcaagtacagaaatttctct
taccttcactgcaaatgggcgactctggaggaactggaaaaggacccgcgcatccaccaa
aaaatcaagcgcttcaggaataagcaggcacaaatgaagcacattttcagtgaaccagac
gaggatctttttaatccggactacattgaggtggaccgtgtgctggaagtggcccacact
actgacacagagaccggagaggaggttacacactatctggtaaagtggtgctctctgtcg
tacgaagaaagcacttgggagctccaagaggatgttgatcctgtaaagatccgtgagttt
gagaacctcaagaaaatccctgatttgaaatatgtggagagacctcaacccgataagtgg
cagaagctggaaaactctcgagactacaggaatgggaacgagttgagagagtaccagctt
gagggaatgaactggcttctattcaactggtacaacaggaaaaactgcatcttggcagac
gaaatgggcctgggaaagaccattcagtccataacattcctcttcgagatcttcagtatg
ggcattcgcggcccattcctcatcattgccccactctctaccatcacaaactgggagcgc
gagttccgcacctggaccgaaatcaacgtgatcgtctaccatggcagccagatcagtcgg
cagatgatcttacaatatgaaatgtaccacagagatgaacatggaaactctgtgtctggc
ttgtttaagttccatggtgtgatcactacgtttgagatgatcatggctgactgccctgag
ctgaagaaaatccactggcgctgtgtggtgattgacgaggcccaccggctgaagaaccgc
aactgcaagcttctagagggactcaagctcatgaacctggaacacaaagtgctgctgact
ggaacaccactgcagaactctgtcgaggaactcttcagcttgctcaacttcctggaacca
cttcagttcccctccgagaccaccttcctggaggagtttggggatctgaaaacagaggag
caggtgaagaagcttcaggccatcctaaagcccatgatgctgaggagattaaaggacgac
gtggaaaagaacttggctcccaaagaggagaccatcatcgaagtggagttgaccaacatg
cagaagaaatactaccgtgccattcttgaaaagaacttcacatttctggccaagggtgcc
aaccagcacaacatgcccaacctcatcaacactatgatggagctacgcaagtgctgcaac
cacccatacctcatcactggtgcagaagagaagattctggaaagcttcaagaagacacac
agccccgatgcctcagacttccagcttcaggctatgatccagtcatcaggaaagctggtc
ctcattgacaagctcctgcctcgtctcatagctggaggtcacaaagttctggtcttctcc
cagatggtgcgctgcttggatatcctggaggactacctcatccagaggaggtacacgtat
gagcgcatcgacggtcgtgtacggggaaacctgcggcaggcagccatcgaccgcttctgc
aaggtggactcagatcgcttcgtgtttctcctgtgcacgcgtgctgggggcctggggatc
aacctgacggccgctgacacctgcatcatctttgactcagactggaacccacagaacgac
ttgcaggcacaagcgcgctgtcacaggattggccagagcaaagcagtaaaggtctaccgg
ctcatcactcggaactcgtacgagcgggagatgttcgacaaggccagcctgaagctgggt
ttggacaaggcagtgctgcaggacatcaaccgcaagggcagcctgaacggagtgcagcag
ctgtctaaattggaggtggaggaccttttgaggaagggtgcatacggtgctctaatggac
gaggaggacgagggctccaaattctgcgaggaagacatcgaccagatccttcagcgccgc
actcagaccatcaccatccagtcagaagggaagggctccacgttcgctaaggccagcttt
gtatcttctggaaacagaactgacatctctctggatgatccaaacttctggcagaaatgg
gctaaaatcgctgagctggagattgactctaaggaagagaaagagagcctggtgatcgat
acgcctcgtgtgcggaaacagacgcgtcattacaactcgtttgaggatgatgagctgatg
gagttctctgagctggacagcgactcggaagaaaggccgtgtcgtacgcgccgcctcaac
gacagaaaccgacgctacctgcgggcggaatgcttccgtgtggaaaaaaacctgctcata
ttcggctgggggcggtggaaggacatcctcacccatggccgcttcaagtggcacttggcg
gagcgggacatggagctaatgtgccgggctctgctggtctactgtgtgcgccactacaaa
ggagacgaaaagatcaaaagcttcatctgggacctcatcaccccaactaaagatggtcaa
aatgaggccctacagaaccactctggtctgtcggcacccgttccccgcggtcgtaagggt
aaaaagctgaagaaccagctgtgtctacctgagttgaacaatgcagattggctggtgcac
tgcaatccagaggtggtgctgcaggacgacagctacaaaaagcacctcaagcagcactgc
aacaaggtacttttaagggttcgcatgctgtactatttgaaggcggaggtcctgggggaa
gcagcgactcaggccctggaaggcatttcagccagcaaactagaggtggctcttcctgac
attgactacattgagattccggctggctggtgggacgctgaagcagacaaatccctcctc
atcggtgtccacaagcatgggtacgagcgatacaatgccatgcgggctgatccagacctg
tgcttcctggagcgagtgggcatgcctgacgtcatggccctttctgcagagcagtcaggc
tcagaggtcccagctgatgcaaatgacagtgttgggaagactgaagacatgaaagacgag
actgaaagcaagatggaggggggggaagataaggaggagagcaaagatgacaccagttct
gttacagacacatcagagaaacaggagaatgttgtttcaagtgaactgggagttccagag
gcctctgagcagggcaggcttctctggccggcaggttctgctttgacggctcgtcttcga
cgactcatcaccacctaccagcgttacaaccgtcgtgagcccctgcgccacgagttcctg
atgctggatggggctagtcatgtgccctggcaactgggtgaagacctgaggagatgcgct
gtagaaccagaccccctgttcctggagtggcagagaaggtggacacgtcgagagcaggca
gatttctatcggacagtttcatccttcggtgttatgtttgacccagagaagaaagtgttt
gattggacacagttccgctctctcgctcgactggagagaaaaacagatgaaagtttagag
agatatttctacaactttgtgtccatgtgtcgcactgcctgcaggcttcccccaaggaag
gatgaaggtcccattgaccacgctctgtttgtggaaccaatcactgaagagcgagcggcc
cgcacactctaccgcattgagttgctgaggaaaattcgggagcaagttcttcgccacccg
ctgctgggacagagacttcagctgtgccagcctagtctctacctgcctgtgtggtgggag
tgcgggaaacacgaccgggacctcctgattggcgccgccaagcatggcttgagccgcact
gactattacatcctcaatgatccccagctctcctttctggaagcccaccgcaactacgtg
cggaaagagaaccacggctaccccgtgccagcctctatgtctggcatgccccatcgccac
tgctgcctttatgacgcaggcctcagccactgccactctccacagcctcctgaataccac
actccgccatctcaccatgcccatggacaccctcacatccatggtcctgtgcaccatcct
actgaggtggtagctggagacccggttggctccctggccatgagtggtggcggtggcccc
agggagggtttcctggactgccctccccttgaggagtccctggagctggcgtcgctgcag
catgatggactggctgccgactccctccatggtaagcccagcaaagaggctttcaacggg
tttcccttcaactcggcttctggagggcagagcatgctcaactcctacggtgtacagggc
gagttgagcgggactcagggggacattgctgactccattgcagggaagctacgcagtgat
gtgctggttggtgaacagggctcgtctgaagagacggggctgatggcaccctccgtagag
ctagacgaactgcaaacgccgtgggagagctcagaccatgccgctgcagctcacatgttc
aacgaggccgacccaatcttgggtgctcctgcactggagtcggagttcctggactcgtca
gatgcacccggagatggccaggtggacactgccttgaacgactgtctgagcatgcccagt
tcggactcacagagcaacccggtcgaccccttgccgtccagcttcatgctgtttaaggag
ctgagtgaagccgagccctcggtcgagcagactgacctatcagccagccctcctccagag
tacgctccaactcccctctctttgggcgatatgagtctctcccatacgggccccactgag
gagccagatgagaagctgagtgactcagacgtcacccgcagtgctcccagccccgttgat
gtggccgggagcgtgacctttgagtttgacaaggaggagctatcacaggatagtcacagc
ctgaccgggacaactcaggggcccgacgaagcatctctggatccgtctgaaggccctcca
gaggaagccctgggtgagaccagtacggaaccactaagcgaagcaagtgtccctgagcat
aatgaagaaaacctcgcagagccttgtgaggagccgatggaagagtctatgctgaagggg
ctttcagatgtgccaccagaggagccttgggaaagccatcctcaggagaagcagcctgga
gaggaaaccctacaggtgccctccgaggagcccgcggaggaggagccctatgagaccccc
tcaaggtcactacacgaagtgcactcggaggaggcatccagcgaaaggctctctgagcct
gtgatcgggagcagtctcagtgacccaaccctctcctctgtaggccccacctcgtcccca
cttccctgtgcctcgccctccctgtccgtccctctgtcagttcccccaacgtcgccagag
cccagcactgccgtccacattaagcaggagctgctgctggagccaaccactgcagagatc
aagcctgaccctgaggccctcgagccagacagcactacactcacacccaggctagaacag
acggagatgctggaagcaaaagaagagataaaacaagagagagtgaaaaccccagctctg
atggtggacagctatgtggaggccccaagatacgctccccaaatgtcagtctgcgaaatg
cccgacagtctccatgatgttcgggaacctaccattgcccagctcctccaggagaaagcc
ctctactcattctctggatggcccaaggacagggtgataattaatcgccttgacagtatt
tgccatgctattctgaaagggaaatggccttcatccagccagtatgagtcgcacagtacc
ctggcaaacacctgtgcccccaacagtggccaccagcgagctgccttcatgccagcccgg
gtacagccttcccagagccttaacttcaacatgccaactgtctcccgcatgcctaaggag
aggttgatggcccctccattcttgtccgacctcaagcaaccaggagtaagaccgcggttt
gaatttgaggcagaggtgctcagcaagccttgccacaccggagagaaaatccaggttggc
attccacatcggggcggaccgctgctgttgaacggctggcaggaagcggcgatggacctc
tccaaaccccctggggagcttggcattggcggggagactggccctgtgggtcatattact
catacagtccacacccctcctcctcctccaccttctcacccccctccaccgcaacataag
ctgcccaccctgagctcaatgcagggctctctgggcctggacatggccggcattctgcag
gccggcctcattcacccagtcaccgggcagatcgtcaacggcagccttcgccgtgacgac
ttcatgagacggaggcgaggccgcaggagaaatgtagacgggccggacatcagcttcatg
cggagccacggactaagtgtgcaggaacagcaggttggcctggcattcagattagaacca
agaccggatagcatcagccattcaacggtgtcgtccaccactaccacccagtctgatcgt
tcctcagcacctcctggtccatctggaccttctagttctcttgggctgccacctccacca
ccaccagagagcctggggattgacagagaagcagccaataagggtctgatggagtggctt
agacaaaaccccaactacatggaaatcccccattttgcctcctcccaaaacgcagccatc
ttgcatagttttgttgagcgtccaaaacagaggaggcaccgctgcaaagaccctaccaag
ctggatgtgaactccctgaccggagaagagcgggtgcccgtagtacacaggagcacagga
cgtaggctgggtggcgctatggctccagcgataaaggaactgtctcgatggctggatgcc
aactctgaatattgtgtggctccagactgggctgaagtggtgaaacattcgggatttctg
ccagagggcaagttcactcgaatcctgacagaacctgttagccgagatcctgggcctcgc
cggaggggtcgacggcctcgcagtgagatggtcaaagctggacccatcctcccggagtct
ccttcgaacatggggcccctgtttatgaacgggggactgattggaagcatggacttggtc
agtctgcaaaacttgcggaacgttccgggcatccccctcacaggcctgatgggattccca
cacggctttgcagccgtcccagcgggagcgggagaggatgccaagaacggcatcagcatg
cttcccatgatgcttcacggcatggcggcggtgcagccgcccatgtttagcgtgagcggc
ctcatgagccagccctcgtcatcctcgccctcgtcctcctcccccaccacgaccctgtcc
acttcagcaggccccacggtgatcacctccacctctgctgccctcagtccctctagcggc
cccagtcccgtcaccagtggtccgagccccccggccgagagctgcagctccaccacggcc
tcgggcttggacaagcgcaaggacgacagagcacctgtggaagggaagccccctgggcct
cccgttggacacgcaaccgctaccgttagcagcaccacgcctaccagtgtgtctgccggc
agcatcagcagcactggcagccacttgaccttcaacccgtttctaatcccagggatgtcc
cacggactgctgtacccacacatgttcttgccccatgggggcatcatggcactgccgggg
atgcccgccgccgacagctccggcagcccgaagaggaagagaaagaaattgagagaggac
ggggctccggagggcgggagcgccggaagccctccaatggacagcacgcctgccagaggg
cccagcgacgctccgcagatacgggcggacgcggacaatgacgccccaagtgaagagggg
ccgcaaaaccaggagacagacacaaacagcaagggccacgaggaccacagcaacgccctt
cctcctgaggctcccatagagtgcagcagcaaagaggaggagagacaaacagaggaaaag
gaggagcaggatgtggaagggaaggataaaagactgcccgagaccgaaaggcaagaatat
gaacccagggaggactcgcagtag
DBGET
integrated database retrieval system
