Alosa sapidissima (American shad): 121706930
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Entry
121706930 CDS
T11137
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121706930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121706930
Transporters [BR:
asad02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121706930
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121706930
NCBI-ProteinID:
XP_041945014
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Position
4:complement(5544381..5572491)
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AA seq
612 aa
AA seq
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MENSHKAEVQQKLVGGGGGRVPPKTQSAEREQWSSKMQFFLAVAGHIVGLGNVWRFPYLC
YRNGGGVFFIPYVVFLFACGMPLFLLETSLGQYTSQGGITCWKKICPLFEGLGYGSQVVV
LYTGIYYIIILAWAFLYLFSSFSSELPWASCKNTWNTENCFEYDQTNLTEDTTVKTTSSV
VEFWERRILGLSSGIEELGSVRWDLALCLLLAWVICYFCVWKGVKSTGKVVYFTATFPYV
MLVVLLVRGLTLPGAADGIKFYLYPDPARLADPQVWMDAGSQIFYSYGVCTGVLTALGSY
NKYDNNCYKDCIYLCLLNSLTSFVAGFAIFSVLGFMANEQGLDISMVAEAGPGLAFIAYP
RAVALMPLPQLWAIFFFIMIVFLGLDSEFVYHEALVTAISDMYPSFFQEQYKRKVLLLII
SIASFLIGLVMVTEGGLYVFQLFDYYACSGMTLLTFAILQSICIGWVYGAGHLYDNIEDM
IGYRPWPVMKYCWQYVTPIVCTATLIFSIVKHTPLQFNNTYDYPWWGYAIGGFFTLSSTL
VVPLWMIYAICTTPGTMRERLRTLCTPAKDLPPRGQSQQKELQLVTFETFTMLQTLRTSS
THSDSVFLKGPS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcacataaagcagaagttcagcagaagctggtgggtggtggtggaggcaga
gtcccacccaaaactcagtctgcagagagagaacagtggtccagcaaaatgcaattcttc
ctggctgtggctggacacatagttggccttgggaatgtatggaggttcccttacctgtgt
tacaggaatggcggaggtgttttcttcataccgtatgtagtgttcctttttgcctgtgga
atgcctctctttctcctggagacttcactgggccagtacaccagccaggggggcattact
tgttggaagaaaatttgtccactttttgaaggattgggctatggaagtcaggtggttgtt
ttatacactggaatctattacatcatcattctggcctgggcattcctctatctgttttct
tccttcagctctgagctgccctgggcaagctgtaaaaacacctggaacacagaaaactgc
tttgagtatgaccagaccaatctgactgaggataccactgtgaaaacaacatcatctgtt
gttgaattttgggagaggaggattctgggattgtctagtggaattgaggagctgggttct
gtgagatgggacctggctctgtgtcttctgctagcctgggtcatctgctatttctgtgtc
tggaaaggagtgaagtccacaggcaaggtggtgtacttcacagctaccttcccctacgtg
atgctggtcgtgttgctggtccgggggctcacactgcctggggcagcggatggcatcaag
ttctacctctaccccgatccagcacgcctggctgaccctcaggtgtggatggatgctggg
agccagatcttttactcttatggagtttgcactggtgtcttaacagctctcgggagctac
aacaaatatgataacaactgttacaaagactgtatttacttgtgcctgttgaacagtctg
accagttttgtggccggttttgccatattctcagtactaggcttcatggccaatgagcag
gggctggatatctctatggttgctgaggcaggccctggattggcttttatagcatatccg
cgcgctgtggctttaatgcctcttccccaactatgggccattttcttcttcatcatgatt
gtgttccttgggttggatagtgagtttgtttaccatgaagctttggtcaccgctatcagc
gacatgtatccatccttcttccaagagcaatataaacgtaaggtcctcctcctgatcatc
agcatagcgagcttcctgattggcctggtaatggtcacagagggtggcctctatgttttc
cagctgtttgattactatgcttgcagtggcatgactctactgacttttgccattttgcag
tctatttgcatcggatgggtttatggcgcaggacatttgtatgacaacattgaagacatg
ataggctaccggccgtggcctgtgatgaaatattgttggcaatatgtaactccaattgtg
tgcacagctactttgatcttctccattgtgaagcataccccgctgcagtttaacaacaca
tatgattatccatggtgggggtatgctattggtggattcttcaccctgtcctctactctg
gtggtgcctttgtggatgatatatgccatctgtaccaccccaggaaccatgcgtgagaga
ctacggacgctgtgcacccctgcaaaggacctcccgcccagaggccagtcccaacaaaag
gagctccagttagtcacttttgagacattcaccatgttacaaaccctgcgcacgagtagc
acccactcagactctgttttccttaaaggaccatcctaa
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