Alosa sapidissima (American shad): 121707010
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Entry
121707010 CDS
T11137
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04510
Focal adhesion
asad04512
ECM-receptor interaction
asad04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121707010 (col2a1b)
04518 Integrin signaling
121707010 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121707010 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
asad00536
]
121707010 (col2a1b)
Glycosaminoglycan binding proteins [BR:
asad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121707010 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
SNARE
Motif
Other DBs
NCBI-GeneID:
121707010
NCBI-ProteinID:
XP_041945140
LinkDB
All DBs
Position
4:complement(7256026..7305260)
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTLLLLVATQVALLAVVRCQEEDDQEDPGSCLQDGSRYNDKDVWKPEPCRICV
CDTGTVLCDDIICEEPKDCPNAEIPFGECCPICPEQPAPPSGVPGAKGQKGEPGDITDVV
GPRGPAGPMGPSGEQGPRGDRGEKGEKGSPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGSS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GTKGETGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGNAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAGGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGMSGDPGIPGFKGEAGPKGELGRA
GPQGPLGPAGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPA
GVSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPAGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEGGKAGEKGSGGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDAGVPGEAGPGGATGPRGERGFPGERGSAGPQGLQ
GPRGLPGTPGTDGPKGATGPGGAPGAQGPPGLQGMPGERGPGGISGPKGDRGDNGEKGPE
GAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAAGARGAPGDRGETGPPGPAGFA
GPPGSDGQPGTKGDQGEPGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGAT
GFPGSAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEK
GESGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDR
GPPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGAAGIKGDRGNTGPNGAPGAPGATGAP
GPVGPTGKQGDRGEAGPQGPSGAPGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPAGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGET
GPSGPQGNPGPPGPPGPPGPGIDMSAFAGLGQPEKAPDPMRYMRADQAAGGLRQHDAEVD
ATLKNLNSQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGETCVHPKPSGIPRKNWWSSKGGDRKHVWFGETMNGGFHFSYGDDSLAANTASIQMT
FLRLLSTEASQNITYHCKNSVAYMDAATGNLKKAVLLQGSNDVEIRAEGNSRFTYSALED
GCTRHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGPNQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactttattgctacttgtagcaacacaagtcgcgcta
ttagccgttgtcagatgtcaggaggaggatgaccaggaagaccctggcagctgccttcag
gacggcagtcgctataacgacaaggacgtgtggaagccggagccttgccgcatctgcgta
tgcgacacggggacagtcctgtgcgacgacattatctgcgaggagcccaaagactgcccc
aatgccgagatcccattcggagagtgttgccccatctgccccgagcagcccgctcccccc
agtggtgtaccaggtgccaagggacagaaaggtgaacccggagatatcacagatgtggta
ggaccaagaggacctgcaggacccatgggaccctcaggagagcagggcccgcgcggagac
aggggggagaagggagagaagggatctcctggcccccgtggcagagatggcgaacctggc
attcctggcaaccccggaccccctggacccccaggaccaaatggaccccctggacttggc
ggaaactttgctgctcagatggctggtggttttgatgagaagtctggtggtgcccagatg
ggagtgatgcaaggaccaatgggcccaatgggacccagaggaccacccggacccagtgga
tctcctggaccacaaggtttccaaggcaaccctggagaggctggagagcccggttcatct
ggcccgatgggaccccgtggtccacctggaccctctggcaaacccggagatgatggtgag
gctggtaaacctggtaaatctggtgagcgtggacctactggccctcagggagctcgtgga
ttcccaggaactcctggattgcctggaatcaaaggacacagaggttacccaggtcttgat
ggtactaagggagaaactggagccgctggatccaagggagagtctggtgctcccggtgag
aacggcgcccctggacccatgggtcctcgtggtcttcccggtgagagaggccgccccgga
ccctctggcaatgctggcgctcgcggaaatgacggtttgcccggccctgctggtcctcct
ggccctgttggtccgtctggagcccctggcttccccggttcccctggttctaagggtgag
gctgggcccactggcgctcgtggacctgagggagcccagggtccccgtggagagtctgga
acccctggatctcctggcccctctggagctggcggcaaccctggtactgacggcatccct
ggagctaaaggatctgctggcgctcctggtattgctggtgcccctggcttccccggaccc
cgtggacctcctggaccccagggagccactggacctcttggaccaaagggcatgtctggt
gaccccggtatcccagggttcaagggtgaagctggacccaaaggagagcttggtcgtgct
gggccccaaggtccccttggccctgctggagaggaaggcaagagaggtccccgcggagag
cctggcgctgccggacccctcggacctcccggagagagaggctctcccggtaaccgtggt
ttccctggtcaggatggtctggctggtcccaagggtgcccctggtgagagaggacctgct
ggagtgtctggacctaagggtgctggtggtgaccctggtcgccctggagagcctggcctt
cctggagccagaggtctcactggtcgccctggcgatgccggtcctcagggaaaagttggc
cctgctggtgctgctggtgaggatggtcggcctggaccccctggccctcagggggcgcgt
ggtcagcctggtgtgatgggattccccggccccaagggagccactggagagggtggaaag
gctggagagaaaggatccggtggcgctcctggtctgagaggtcttcctggtaaagatggt
gagacaggtgctgctggaccccccggccctgctggacccgctggagagagaggagagcag
ggacagcctggaccctccggcttccagggcctgcctggaccccccggcccccctggtgag
ggtggcaagcctggtgatgctggtgttcctggagaggctggtcctggtggtgctaccggg
cccagaggagagcgtggattcccaggagagagaggcagcgctgggcctcagggtctgcag
ggaccccgcggtctccccggaactccaggaactgacggacccaagggtgccactggacca
ggcggtgctcccggtgcccagggaccccctggtctgcagggaatgcccggagaaagaggc
cccggtggcatctctggacccaagggagacagaggtgacaatggcgagaaaggacctgag
ggtgctcctggcaaagatggtgcaagaggtttgaccggccccattggtcctcctggtcca
ggcggccctaatggcgagaagggagaatctggccctgctggaccttctggagctgctggt
gcccgtggtgctcctggtgacaggggtgagactggtcccccaggtcctgctggattcgct
ggtcctcctggttctgatggtcagcctggtaccaagggagatcagggtgagcctggacag
aagggtgatgctggtgcccccgggccacaaggaccctccggagcccctggaccctctgga
cccactggtgtgtctggacctaaaggtgctcgcggtgcccagggaccccctggtgccact
ggtttccctggttctgctggacgagttggacccccaggtcccaatggtaaccctggtcct
gcaggccctgctggtcctcctggtaaagatgggcctaagggtgtgcgtggtgacggcggc
cccccaggcagacagggagacgctgggctgcgcggacctgctggaacccctggagagaaa
ggagagtctggagaggatggtccccctggtcccgacggtccatctgggcctcagggtctg
gctggtcagcgtggtatcgtgggtcttcctggacagcgtggtgagagaggcttccccggc
cttcccggaccatctggtgagcctggaaagcagggagctcctggtggagctggagaccgc
ggaccccccggccccgtcggtcctcctggtctgaccggaccctctggagagcctggtaga
gagggcaaccctggatctgatggtccccctggcagagatggtgccgctggaatcaagggt
gaccgtggcaacaccggtcctaacggcgctcctggtgcccctggagctactggtgccccc
ggcccagtcggacccaccggcaaacagggagatagaggagaggcgggtccccaaggacct
tctggagcccctggacctgctggcgctagaggcatggctggaccccaaggaccacgcgga
gacaagggagaggctggcgagggtggagagagaggacagaagggacacagaggcttcacc
ggtctgcagggtctgcctggacctcctggtcaggctggtgaccagggtgctactggacct
gctggccctgctggttcaagaggaccccctggcccagttggaccttctggaaaggacggt
tccaatggaatgcccggccctattggacctcctggacctcgtggacgttctggcgaaact
ggtccctctggtccccaaggtaaccccggacctccaggtcctcctggtcctcctggccct
ggcatcgacatgtccgcattcgccggcctgggtcagcctgagaaggcccccgatcccatg
aggtacatgcgtgccgaccaggcagccggaggcctgaggcagcacgatgccgaggtggac
gccaccctcaagaatctcaacagccagatcgagaacatccgcagccccgagggctccaag
aagaaccccgctcgcacctgccgcgacctcaaattgtgccaccccgactggaagagcggc
gagtactggatcgaccccaaccagggctgcacagtggatgccatcaaggtcttctgcaac
atggagactggcgagacttgcgtgcaccccaagccttctggcatcccacgcaagaactgg
tggtccagcaagggtggagaccgcaagcacgtctggttcggcgagaccatgaatggcggt
ttccatttcagttatggggatgatagcctggccgccaacaccgccagcatccagatgacc
ttcctgagactgctgtccacagaggcgtcccagaacatcacctaccactgcaagaacagc
gtggcctacatggacgcggccacaggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatccgtgccgagggcaacagccgcttcacctacagcgcgctagaggat
ggctgcacgagacacacagggcaatggggaaagacagtcattgagtacagatcacagaag
acctctcgtctgcccattgtggacatcgcccccatggatattggaggccccaaccaggag
tttggcgttgatgttggcgcagtctgcttcttgtaa
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integrated database retrieval system
