Alosa sapidissima (American shad): 121707067
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Entry
121707067 CDS
T11137
Symbol
hnrnpa1a
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1a isoform X1
KO
K12741
heterogeneous nuclear ribonucleoprotein A1/A3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121707067 (hnrnpa1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121707067 (hnrnpa1a)
03041 Spliceosome [BR:
asad03041
]
121707067 (hnrnpa1a)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121707067 (hnrnpa1a)
mRNA cycle factors
Common to processing body (P body) and stress granule
121707067 (hnrnpa1a)
Spliceosome [BR:
asad03041
]
Common components
Common spliceosomal components
hnRNP proteins
121707067 (hnrnpa1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121707067
NCBI-ProteinID:
XP_041945243
LinkDB
All DBs
Position
4:complement(25636994..25658796)
Genome browser
AA seq
358 aa
AA seq
DB search
MSKETPREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDSETKRSRGFGFVT
YSNAKEVDDAMAARPHKVDGRAVEPKRAVSREDSCKPGAHTAVKKIFVGGIKEDTEEHHL
RDYFIQFGEIEAINIMTEKNSDKRRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKAL
SREEMNRIGMSPRGGRGGGGGGGGNFGRGGGGGGGYGGGYGGGRGGYGDGYNGYGGNGGG
YGGGGPGGYGGGNRGYGGGGGYGNQGGGYGGGGGYNDGYNGGSSGGGNGNFGGGGGGNFG
GGGNYNDFGNYNQSSSSYGPMKGGNYGGGGGRNSGPYGGGYGGGSGGGYGGGSGGRRY
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagagacccctcgtgaacctgaacagctccgcaagctgttcataggaggactg
agttttgagacgaccgacgagagccttcgtgcacatttcgagcaatggggaaccctcacg
gattgcgtggtcatgagggactccgagacaaaaaggtcaagaggatttgggtttgtgaca
tacagcaatgcaaaagaagttgacgacgccatggctgcccgtccacacaaagtggatgga
agagcagttgagcccaagagagcagtttccagagaggactcctgcaagcctggagcacac
acagcagtcaaaaagatatttgtcggaggtatcaaggaagacactgaggagcaccattta
cgggactacttcatacagtttggcgagattgaggccatcaacatcatgactgagaagaac
agtgacaagaggagagggtttgcctttgttacgtttgatgaccacgactctgtcgacagg
attgtcatccagaagtaccatacagtgaatggccacaactgcgaggtcaggaaagccctg
tcacgggaggagatgaacaggattggcatgagcccaagaggtggccgtggaggaggggga
ggaggtggtggaaactttggaagaggtggtggtggtggaggaggatatggaggtggatat
ggaggtggaagaggaggctatggcgatggttacaatggctatggaggaaatggtggtggc
tatggcggtggaggtcctgggggctatggcggtggtaaccgaggttacggtggaggtggt
ggctatggcaaccagggtgggggctatggtggtggtggtggctacaacgatggctacaat
gggggaagcagcggtggaggcaatggcaacttcggtggtggtggtggtggaaactttgga
ggtggtggcaattataacgactttggtaactacaaccagtcatcttccagctatggcccg
atgaagggtggtaactacggaggaggcggaggccgaaacagtggcccatatggtggtggg
tatggtggaggatctggcggtggctatggaggaggctccggaggccgacgatactaa
DBGET
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