Alosa sapidissima (American shad): 121707267
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Entry
121707267 CDS
T11137
Name
(RefSeq) contactin-4 isoform X1
KO
K06761
contactin 3/4/5/6
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121707267
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
asad00537
]
121707267
Cell adhesion molecules [BR:
asad04515
]
Immunoglobulin superfamily
Contactins
121707267
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
asad00537
]
Others
121707267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
121707267
NCBI-ProteinID:
XP_041945619
LinkDB
All DBs
Position
4:complement(8789038..8877365)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKMLLPWELLILLSLKDCLAERNIRHGPVFTQEPSDSVFPLNSEDNKVFINCKAKGNPTP
HYRWKFNDQDIDIDMDSNYNLVEGNLLIKRPQASQHGGMYQCIASNAIGTIVSREAKVQF
AFLQPFSSKPRNAVLVREGQAVVLLCGPPPHFGEIKYSWIFNGQPGFLVRDKRRFVSQRT
GNLYIAKVEASDVGNYTCVMRNVMTNATVFSSPSTVVLRSDAVMGEYEPKIEVQFGENIH
VAKGSSVKLECFALGNPVPSISWRRADGSPLPGKIKINHSNGVLEIPYFRPEDAGLYECI
AENARGRNVARGQLIFDNVEHLHWAQTLRDAHMAIEASLQWECRANGNPRPSYKWLRNGE
LITTEDRVRVEEGRLFITNINVMDAGMYQCAAMNQHGVIYASAELKVVASPPDFSRNPVK
KSTLIQQGGEAIMECRPHASPRASYSWRRGGDFLKNTKRRTILEDGTLRIANVSKSDGGR
YTCVARNPFGTASSTGTLVVKEPTRITAPPLSMDATVGESIVFPCVISTDSTLEPTFKWF
FNGKLLDFTRQDHFEMIGGGSAGDLMIRNIQLKHSGKYVCMVHTLVDSVSAAADLLVRGS
PGAPEGVVVGEITDTTAQLSWVPGSDHHSPITSYIVQARNPFSIGWQAVKTVPATVPGQM
LHATVVALNPFVDYEFRVVAVNSVGVGEPSAPSRQIRTKAAAPEIAPASVSGGGGNRGEL
VIAWEPVPEEHQNGEGFGYVVAFRPVGTTTWKQAVMASSEASKYTFKNDSLPPLAQYEVR
VGVYNGVGEGPFSDVAIVFSAEEEPSIAPSRVWARTLSASEIQVYWEPIAERETNEKIFG
YEVVWREEGAASSAVESVRVTDTAATITGLKGSTAYLISVSAHNSAGTGPPSSPVNITTK
KPPPSHAPANIEWNLTNSKILLNWEHVKAMDNESDVTGYKVVYRQNWLGRTSIVETNRTS
VELQLPSGEDYLIEIRSQSEGGDGSSSGPIRIPKMSSLNSKGHLNADISKVADFCAMIFV
VSRLFL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgctgttgccatgggaactgttaatccttctgtcactcaaggactgtctcgca
gagagaaatatccggcatgggcctgtcttcactcaagagcccagtgacagcgttttcccg
ctaaactctgaagataacaaggtgttcattaactgcaaagctaaaggcaaccccactcca
cattacagatggaagttcaacgatcaagacattgatattgacatggactccaactacaac
cttgtggaaggaaacttgttgatcaagagaccacaagccagccagcatggcggcatgtat
cagtgcatagccagcaatgccattggaaccattgtcagccgggaagctaaagtgcagttt
gcattcctgcagccgttcagcagcaagccgaggaacgccgtgttggtgcgagaaggtcag
gcggttgttctgttgtgcggtccgccccctcattttggagagatcaaatactcgtggatt
ttcaacgggcagccggggttcctggtccgcgacaagcgacgcttcgtgtcccagcgaacg
ggcaacctctacatcgccaaggtggaggcgtcggacgtgggcaactacacgtgcgtgatg
aggaacgtgatgaccaacgccaccgtcttcagctccccctcaaccgtggtcctgcgctcg
gacgctgtgatgggcgagtacgagccaaagattgaagtccagtttggagaaaacatccac
gttgccaagggatcctcggtcaagctggaatgtttcgccttaggaaatccagtgccttcc
atctcgtggcggagagcagatgggagcccactccctggcaagatcaaaatcaaccactcc
aacggggttctggagatcccgtacttccgcccggaggacgccggcctgtatgagtgcatc
gccgagaacgctagaggacgaaacgtagccagaggacagctcatttttgacaatgttgag
catctgcactgggcacagactctgagggacgcgcacatggccatcgaggccagcctgcag
tgggagtgtcgggctaatggcaatcccaggccctcatacaaatggctcaggaacggagag
ctcatcacgaccgaggatagagtacgagtggaggagggcagattattcatcaccaacatc
aacgtgatggacgcagggatgtaccagtgcgcagcaatgaaccagcatggggtcatttat
gccagcgctgagctcaaagtagtggcgtcgccgccagacttttccaggaacccggtgaag
aagtccacgctgatccagcagggcggggaggccatcatggagtgtcggccgcacgcgtcc
ccccgagcctcctactcctggcgcaggggcggcgacttcctgaagaacaccaagcggcgc
accatcctggaggacgggactctccgcatcgccaacgttagcaaatccgatggaggccga
tacacctgcgtcgcccggaacccttttggaaccgccagcagcactggcacgctggtagtt
aaagagccgaccaggatcacagcgccgcccctgagcatggacgccactgtgggggagagc
atcgtgttcccctgcgtgatctccaccgactccactctagaacccaccttcaagtggttc
ttcaacggcaagctcctcgatttcaccaggcaggatcactttgagatgatcggcgggggt
tctgcaggtgacctgatgatcagaaatattcagctcaagcactcgggaaaatatgtctgc
atggtgcacacgttggtggacagtgtgtcggccgcagctgacctacttgtgcgagggtcc
cctggcgctcccgagggcgtggtcgtgggtgagatcaccgacacgactgcccagctctcc
tgggtcccggggtctgaccaccacagtcccatcaccagctacattgtccaggcaaggaat
cctttctccataggttggcaggcagtcaaaacagtgcctgcgaccgtgcctgggcagatg
ttacatgccacagtggtcgccctgaacccttttgtggattatgaattcagggtggtggct
gtcaacagtgtgggcgtcggtgagcccagtgcaccgtccaggcaaatccgcaccaaagca
gcagcgccagagatcgccccagccagcgtgagcggtggaggtgggaaccgtggagaactg
gtaatagcatgggagcctgtccccgaggagcatcagaacggagagggatttggctatgtc
gtggcttttcgacccgtcggcacgacgacctggaagcaagccgtgatggcttcctctgag
gcctccaagtacacgttcaaaaatgacagcctgccaccgctggcccagtacgaggtgaga
gtgggcgtgtacaatggcgtgggagaaggaccgtttagtgacgtggccatcgtcttctca
gcggaggaggagccctcaattgccccctcgagggtgtgggcacgtaccctgtctgcctcg
gaaatccaggtttactgggagcccatcgccgagagggagaccaacgagaagatctttggt
tacgaggtggtgtggcgtgaggagggggcggcctcgagcgcggtggagagtgtgcgggtc
acggacacggcggccaccatcacggggctgaagggcagcacggcatacctcatctccgtc
agtgcccacaacagcgccggcaccggaccccccagtagccccgtcaatatcaccactaag
aagccaccaccgagccatgctccagccaatatagagtggaacttaaccaactcgaagatc
ttgttgaactgggaacacgtaaaggccatggacaatgagtcagatgtcaccggctacaag
gtggtgtatcggcagaattggctcggccgcaccagcatcgtggagaccaaccggacgtct
gtggagctgcagcttccctcaggagaggactacctcattgaaatcaggtcacagagcgag
ggaggagacggaagcagcagtgggcccataaggataccaaagatgtccagtcttaattca
aaaggccatttgaatgcagacatcagcaaagtagcagacttctgtgcaatgatttttgta
gtgtcacggctgtttctatag
DBGET
integrated database retrieval system
