Alosa sapidissima (American shad): 121707295
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Entry
121707295 CDS
T11137
Name
(RefSeq) homeobox protein AKR isoform X1
KO
K19553
homeobox protein TGIF2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121707295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121707295
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121707295
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
FTO_CTD
Motif
Other DBs
NCBI-GeneID:
121707295
NCBI-ProteinID:
XP_041945692
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Position
4:complement(32136209..32144801)
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AA seq
470 aa
AA seq
DB search
MIGSQYHRGGFRRYCQLPADQPRKLAEIAAALEEERGGETEYSAMSDSDAGEDEGYPLDL
SSGGNGGAGGSGKRRRRGNLPKEAVQVLKSWLFEHRFNAYPSEQEKLSLSGQTNLSVLQI
CNWFINARRRLLPDLLRKDGKDPTQFTISRRAGKAEGRHSSGGSGAGGPSSPESPAAPSL
PALRPSVIRPAPTLDLSLLGNTATAILTGAGCLPGRDGHGHVRALMQVDTQGLLKKEAHP
VHLCDEQSPITTTTHSSSNPSAVTSIPPPSATTTTTSIPTLGTASPTGGLFNTPPPTPPE
LCPSQDFSDLKLLVEAALQRAAEQEHQKRQQQQEKQMAMLPVSVTPSPEPAVKCAQPEPC
IVRASKPEHQTPPAAPTPNRDSSIQLSSLEKPVMPVSVPVFSSHSPLPSALQGGGATVMA
GSPASCQVGTWSVVRGDVRQAATSAAVTASPNATPAVWSHSLHTVSEKVN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgattggatcccagtaccatagaggagggtttagacgctactgtcagctgccagcagac
cagccaagaaagctggcggagatagctgcagcgctggaggaggaacgaggcggagagacc
gaatattcagccatgtcagacagtgacgcaggtgaagatgagggttaccccttggaccta
tccagtgggggaaacggaggagcagggggctctgggaagcgccgccgtcgtgggaacttg
cccaaggaagcagtacaggttctgaagagttggctgtttgagcaccgcttcaatgcctac
ccttctgagcaggagaagctcagcctctctggacagaccaacctctctgtgcttcagatc
tgtaactggttcatcaatgcacggaggcgcctgctgccagacctgctgcgtaaggacgga
aaggaccccacccagttcaccatctcgcgccgcgccggcaaggccgagggccgccactcc
agcggcggcagcggagccggaggccccagttccccggagagccccgcggccccatcgctc
ccggcgctgcggccctccgtcatccggcccgcccccacgctcgacctcagccttctgggc
aacactgccacggccatcctgactggcgccggctgcctcccgggcagggacgggcacggg
cacgtgcgggccctcatgcaggtggacacgcagggtctactgaagaaggaggcccaccct
gtgcacctgtgcgatgagcagtcccccatcaccaccaccactcactcaagctccaacccc
tccgctgtgacctccatacctcccccctctgccaccaccaccaccacctccattcccacc
ttgggcacggcgagcccgactgggggcctcttcaacacgccacccccgaccccaccagag
ctctgcccctcacaggacttcagtgacctgaagttgctggtggaggccgcgctgcagagg
gctgccgagcaggagcaccagaagaggcagcagcagcaggagaagcagatggcgatgctt
ccggtgtctgtcacgccgtcccccgagccggccgtcaagtgcgcccagcctgagccctgc
atagtcagggccagcaagcccgagcaccagacccccccagctgccccgaccccaaacagg
gactccagcatccagctgagctcgctggagaagcctgtgatgccggtgtctgtgccggtg
tttagctcccattccccactgccctcggccctgcagggcggcggagccacggtcatggcc
ggatcgcctgccagctgccaggtgggtacgtggagcgttgtgcgtggcgacgtcagacag
gcagccacctctgccgccgtcactgccagccccaacgccacaccagccgtgtggagccat
tccctgcacacagtctcagagaaggtcaactaa
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