Alosa sapidissima (American shad): 121707300
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Entry
121707300 CDS
T11137
Name
(RefSeq) protein strawberry notch homolog 2-like isoform X1
KO
K26273
protein strawberry notch
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121707300
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121707300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
MmeI_TRD
Motif
Other DBs
NCBI-GeneID:
121707300
NCBI-ProteinID:
XP_041945704
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Position
1:37030550..37064076
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AA seq
1816 aa
AA seq
DB search
MPMLATFVAMDAEDYLLPEDSLDSPEYGTPSSPLASSMESPIFPSNSWGLSQQTAYSQQF
PMQSERQYSSTSSTVTPMDVFNSAPFHDDFDLTRNDFPQELIDELSNNSLFSSPRDSLSD
YGADSLPHTSTAMVAWGNINTSGISQRESLSRTHDLSSLDDLSAIINTPPLGGFQPSAPV
PPPAEEEEEADEEETEELGHVDTYAEYKPSKSTIGISHPDFVVETNTLSSVPPPDVTYTL
SIPASAINTGMLSALQLEAIIYACQQHEVILQNGQRAGFLIGDGAGVGKGRTVAGIILEN
YLKGRKKSLWFSVSNDLKYDAERDLKDIDASSLPVHALNKIKYGDTATSEGVLFATYSAL
IGESQAGGQHRTRLKQILDWCKPNFDGVIVFDECHKAKNATSTKMGKAVLDLQSKLPKAR
VVYASATGASEPKNMIYMSRLGIWGEGTPFKTFEDFLHAIEKRGVGAMEIVAMDMKVSGM
YIARQLSFAGVSFRIEEIALDSEFKLMYNKAARLWAEALALFLGAANTLGLVSRKSLWGQ
FWSSHQRFFKYLCISAKVRRLVELAKTELEQGKCIVIGLQSTGEARTREVLDENDGHLDR
FVSAAEGVFQSLVQKHFPLEKPKRDKPAGNKRKRKPRGRPPKYPKHSKDMVGEVISISDS
SSCESDGMESDSNSSPESPQDNDDVIFVNHINGHTAKLEELKQALLSKISALGKELPLNT
LDELIDRFGGPEMVAEMTGRKGRVVRRPDGSVRYESRAEQGLTIDHVNMREKERFMNGEK
LVAIISEAASSGISLQADKRVKNKLRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYI
FLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKFNFENKYGNKALDKITKAI
LGHIKNTVPAPKDYPGGDGVFFRNMKQCMIDVGILASNPRFVINAEKDCTITKFLNRILG
LEVHQQNYLFQYFTDNFEHLIEKDKKEGKYDMGILDLAPGNDEIREETQERFLTAGNPQE
GQVILYKISVDRGMPWEEAFSKANTLTGEDEGFYLSHKLRGSMPCVLLAEQGRGRNLIVF
KPNIGKQAHPESLDNLQLRYRKVTPEEAKDCWENQFEFSLQKCSHAHWKGKCKQKELGHE
CWLGMRLRQYHMLCGALLRVWKRVADIVSDITNSSILQIVRLKTKHNSKQVGIKIPENCV
GRVRTELLQMDEEVKRQRQEREHRAQEKLATEQLLLRLAKLRAANPNVNLHNLAALYPRA
SAVATASATGSHRLLPALVKKEVAEDEVLDLTLSPSPSPDSSTAEGGADADRSPSLPETL
NLEALISQEKQRERSSSAHTLTLHARQLQQQQQQQHQQHQHQQPPQQQQRSPLPPRLLSQ
QRSLTPAQAQQRQQQTSRLLMAHANLHQQLLQRPGSPLTSHGRPAGTVGRGPYAQSAPRG
PPQTRQPRHTANAAAGAHKMQRANESAHKMQPLQSAPHTALSLSALKQQIRTDTHNILQQ
QRQQQRRELPYAQQATNRQLLPNTLHGSNTHAMHMGNTHTQQQQLLNTQASSTRLMQQQQ
QQRQQMIHNSLGPQHSSHAQPRTLAQTQPHAQVNTQALSVSPPIALDSCPSPDDILDFLD
CSASSSVLPPSYYSAASSHAVSSSPSLSSSSSSPSVASSASLYSAGLPLPMGTGAGSSSV
FVPSSTSSSANLPILPSNHAFLSSSNVFSSNSSSSILPPAHTLLPSSAHTNSSHLASSNH
SLNPSLLSGAHSLPSPPDAYLLSSANPSLFSSSSSSSSSSSSLPNGHCSMDALDMLRSAA
GDRQSVIQHKPEWDAT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgctcgccacatttgttgccatggatgcagaggactacctgctcccagaagac
tctctggacagcccagaatatggcactcccagctctcctctggcgtcctccatggagagt
ccaatatttccctcaaactcttggggattgtcccagcagactgcatatagtcagcagttc
cctatgcaatctgagaggcagtacagctcaacctcttcaactgtgacgccaatggatgtg
ttcaactcggcacccttccatgatgattttgacctgaccaggaatgattttcctcaggaa
ctcattgatgaactctccaacaactccttgttctcctctccacgtgactcgctgtcagac
tatggcgcagacagcttgccacacacctccactgccatggtggcctggggcaacatcaac
acgtctggcattagccagagagagagcctgagcagaactcatgacttgagtagtctggac
gacctgtcagccatcatcaacacaccaccactgggaggattccagccctctgctccagtt
ccaccacctgcagaggaagaggaggaggccgatgaagaggaaacagaggagctgggccat
gtggacacatacgctgaatacaaaccatccaaatccaccattggcatttcccacccggac
tttgttgtggagaccaacaccctgtccagcgtgcccccacccgacgtcacctacaccctc
tccatccccgcgagcgccatcaacactggcatgctgtctgccctgcagttggaggccatc
atctacgcctgccagcaacacgaggtgattctacagaatggacagcgagcgggcttcctg
attggagatggggcaggagtgggaaaaggcagaaccgtggccggcatcatcttggagaac
tacctgaagggccgcaagaaatccctctggttcagtgtttccaatgacctgaagtatgat
gcggagagagatctcaaagacattgatgcgtccagtttacccgttcatgctttaaataag
ataaagtatggagacacagctacctcagagggggtgctgttcgccacatactctgctctg
attggtgagagtcaggcaggcgggcagcaccgcaccagactcaagcagatcctggactgg
tgcaaacccaacttcgatggagttattgtttttgatgaatgccacaaagccaaaaatgca
acatccactaaaatgggcaaggctgtactggacctccagagcaagctgcccaaggcgagg
gtggtgtacgccagtgccacaggtgcctctgagccaaagaacatgatctacatgagccgt
ctagggatctggggggagggcacgcccttcaagaccttcgaagactttctgcatgccatc
gagaaaaggggtgtgggagccatggagatagttgccatggacatgaaggtcagcggcatg
tacatagcgcggcagctgagctttgcgggtgtgtcgttccgcatcgaggagatcgccctg
gacagcgagttcaagctgatgtacaacaaagcagccagactgtgggcggaggccttggcc
ttgttcctgggggcggccaacacgttgggtctggtgtccaggaagtccctgtggggacag
ttctggtcctcgcaccagcgcttcttcaaatacctctgcatctcagccaaagtgcgccgg
ctagtggagctggccaagacggagctcgagcaaggcaagtgcattgtgattggtcttcag
tccacgggtgaggctcgcaccagagaggtgctggacgagaatgatgggcatttggaccgc
tttgtctctgccgctgagggtgtgttccagtcgctggtgcagaagcacttccccctggag
aagcccaagagagacaagcctgctgggaacaagaggaaacggaagccccgtggcaggccc
cccaagtacccaaagcacagtaaagacatggtcggcgaggtgatcagcataagcgacagc
agcagctgcgagtcggacggaatggagagcgactccaactcttcgcccgagtccccacag
gacaacgatgacgtcatctttgtcaaccacatcaatggtcacacagccaaactggaggaa
ctgaagcaggctctgctcagcaagatttctgctttgggaaaggagctacccctcaatacc
ttggatgagctgattgaccgcttcggaggacctgagatggtggctgagatgactgggcgt
aagggtcgtgtggttcgtcgacctgatggcagtgtgcgctatgaatcacgtgcagagcaa
ggcctcaccatcgatcatgtcaacatgcgagagaaggagcgcttcatgaatggagaaaag
ttggtggccatcatctcagaagcagcgagctccggcatctccctgcaggcggacaagcga
gtgaagaacaaactcaggagggtccacatgaccctggagctgccctggagtgccgaccga
gccatccagcagtttggccgcactcatcgttccaaccaggtgactgcgcccgagtacatc
ttcctcatctcagagctggcaggagagaggcgctttgcatcaatcgtggcgaagagactg
gagagcctgggcgctctgacacacggagaccgacgcgccaccgagtccagagacctgagc
aagtttaactttgagaacaagtatggaaacaaagctctggataagatcaccaaagccatt
cttggccacatcaaaaacactgtcccagcacccaaggactaccctggcggtgatggtgtt
ttcttcagaaacatgaagcagtgcatgattgatgtgggaatcctggccagcaatcctcgt
ttcgtcatcaatgctgagaaagactgcaccatcaccaagttcctgaaccgcatcctgggc
ctggaggtccaccagcaaaactacctgttccagtacttcactgacaactttgagcacctc
attgagaaagacaagaaagaaggcaaatatgacatgggcatcctagatctggctccaggg
aacgatgagatccgtgaggagacccaggagcgcttcctgaccgcagggaacccgcaggag
ggacaggtcatactgtacaagatcagtgtagatcgaggtatgccatgggaggaggcattc
agtaaggccaatacactcactggagaagatgagggcttctacctctctcacaagctgcgg
ggaagcatgccatgtgtactgttagcagaacaggggcgcgggagaaacctcatagtcttc
aagcccaacattggcaagcaggctcacccggagagcttggacaacctgcagctccgctac
cgcaaggtgactccagaggaggcaaaggattgctgggaaaatcagtttgagttctctctg
cagaagtgcagccatgcccactggaagggcaagtgtaaacagaaggagctgggtcatgag
tgctggctgggcatgcgtctaaggcaataccacatgctctgtggtgccctgctgcgtgtc
tggaagcgcgtggccgacatcgtttccgacatcaccaactccagcatcctgcagattgtc
cgactgaaaaccaagcacaacagcaagcaagtgggcatcaagatcccggagaactgcgtt
gggcgcgtgcgcaccgagctccttcagatggacgaggaggtgaagcgccagcggcaggag
cgcgagcacagggcccaggagaagctggccaccgagcagctcctgctccgcctggccaag
ctccgcgctgccaaccccaacgtcaacctccacaacctggccgccttgtaccccagggct
agcgctgtcgccaccgcctccgccaccggttcccaccgactcctgccggccctggtgaag
aaggaggtggcagaggatgaggtgctggacctgaccctgagcccttcgccctcgccggac
agcagcacggccgaggggggcgcagacgcggaccgcagtcccagcctgcccgagacgctg
aacctggaggcgctcatctcccaggagaagcagcgggagaggagcagcagcgcccacaca
ctcaccctgcacgcacgccaactgcagcaacagcaacagcaacaacaccaacaacaccaa
caccaacagccgccgcagcagcagcagcgcagtcctctcccgccgcgcctcctgtcccag
cagaggagcctgacgccggcgcaggcccagcagcggcagcagcagaccagccgcctgctc
atggcccacgccaacctgcaccagcagctgctgcagcggcccgggagcccgctgaccagc
cacgggcgcccggccggcaccgtggggcgaggcccctacgcacagtcggcgccgcgaggc
cccccgcagacccggcagcccaggcacacggccaacgccgccgccggcgcacacaaaatg
cagcgcgcgaatgagagcgcgcacaagatgcagccactgcagtcggcgccgcacacggct
ctgtcactgagcgcactcaagcagcagatccgcacggacacacacaacattctacagcag
cagcgacagcagcagcggagagagctgccttacgctcagcaggccacaaacaggcagctc
ctccccaacactctgcatggctcaaacacacacgcaatgcacatgggcaacacacacaca
cagcagcaacagctgttaaacacacaagcatcaagtacccgcttgatgcaacagcaacaa
caacaacgacagcagatgatccacaacagcctgggtccgcagcacagctcacacgcccag
ccccgaactcttgctcagactcagccgcacgcccaggtgaacacgcaggcgctctctgtg
agcccgcccatcgcgctggacagctgtccatctcccgacgacattctggacttcctggac
tgctcggcgtcctcctcggtcctgccgccgtcgtactactcggccgcgtcctcgcacgcc
gtctcctcctctccctcgctgtcgtcctcgtcctcgtctcccagcgtggcctcctcggcg
tcgctctactccgctggcctgcctctgcccatgggcacgggcgccgggtcctcctccgtc
ttcgtgccctcctccacctcctcctctgctaaccttcccatcctgccctccaatcacgcc
tttctgtcctccagcaatgtgttctcctccaacagcagctcctccatcctccccccggcg
catactctcctcccctcctcagctcacaccaactcctcccacctggcctcctccaatcac
tcgcttaacccctccctcctctctggggcccactccctcccatccccgcctgacgcctac
ctcctctcctccgccaatccctcgctcttctcctcgtcctcatcctcctcatcctcctcc
tcttcgttgcccaatggccactgcagtatggacgccttggacatgttgagatctgccgct
ggcgaccgccagtctgtcatccagcacaagccagagtgggacgccacttag
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