Alosa sapidissima (American shad): 121707556
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Entry
121707556 CDS
T11137
Symbol
trpa1a
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1a
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121707556 (trpa1a)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121707556 (trpa1a)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
DUF5992
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121707556
NCBI-ProteinID:
XP_041946181
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Position
1:52271449..52281110
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AA seq
1114 aa
AA seq
DB search
MSIFMVNSKHVPKSSVEVVDDEDTARMRANVFEWAQQGNLVALEKHMAYLTIQDHTGACP
LHHAMSSGHLQTILLIAQAAGTKGLNAVDQVGNTPLHWAVEKEQRESCSALLALGANPNV
LNKSSLSPLHLAVSLHHNTLVEEFLSYSQTDANIEGELGNTPVMIACATDNHEALHILFK
HGAQFCSQNKLGHFPIHAAAFAGAKQSMQVILQRGVEMGHSIEAHINYVDKSCNSPIHLA
LRGGNLEIIKLCMAYGAKINRQQQCDKSTALHSACTQGATEAVKVMLSACQNISDIINIT
DGCSQTPLHKAAIFDHNELAEYLISKGADIDLTDYKGHSPLLLATSCGAWRTVNLLLSHG
CNFTVKDMSGCNFMHLTIMQPGGLRNLPTEFLQHECVRELLGDEDDEGCTPLHYACKLGV
VNSVRSMLGLEVSPNHKSKQKKSALHFAAEFGRINTCYRILETMTDTRLLNEGDEKCMTP
LHLACRNGHVRVVELLLCRGALCQSDYKGCSCLHHAAAGGYTQTMDSLLGSHIKLLDKTD
DDGNTALHLAAREGHTGAVRLLLKRGAQILLNKSDASFLHEAIHNYRKEAVEVVLQSNRC
AEVLGAFNRHSTKRCAVLDMIELLPETFKHLLDLCIKESEEDPNSMNYWIEYNFKWLQSP
IQDVKQARMDKGLDYKPLPALNAMVHHNRVDLLTHPVCRKYLEMKWKAYGVKVHLLNMAV
YMLGLLPLTYLILNLRPILKMADNNTTTNEVTMTTTSLDKQCNIINFCLFLTLAMNLYSM
GKEIVQIYQQRTGYLRDVTNALDWLSAITSVVFVVTLLQDMRTAWHWQIGALAVFYNWMN
LLLYLRRFERFGIYVVMFQEIAKTLVCTSSMFMCLILAVALAFHALMLKQKNFGSVLLSI
MQTSVMMVGELNYHDNILKPYLKGNLPFPTLTFIIFIGFVLLAPILLVNLLIGLAVGDIA
EVQKNAILKQIAMQIELHTGLEEKLPYWFMKRADRATVRVYPNRGFQKASAQLSLIHSII
GDESQEGKTRLNLTSSQSTPLAWELAKQKYRIREISSLTEKQNNLLKLIMQKLEINSESE
DTDGPDSFHSNIHYLHSRTDKWTPVIRAVMAKRT
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatctttatggtaaattccaagcatgtccccaagtcctctgtggaagttgtggat
gacgaggacacagcgcggatgagggcaaatgtgtttgaatgggctcagcagggcaacctg
gtggcgctggagaaacacatggcttatctgaccatacaagaccacactggagcttgcccg
ctgcaccacgctatgtcaagcggacaccttcagaccatactcctcattgcacaagcagca
ggaacaaaagggctgaatgccgtggaccaggttggcaacaccccattgcattgggctgtg
gagaaggagcagagggaaagctgctcggctctcctggctcttggagccaatcccaatgtc
ctgaacaagagctctctgtctccactccacttggctgtcagtttgcaccacaatacttta
gtggaggaattcctctcctacagccagactgatgctaacatagaaggagagctgggaaac
acacctgtaatgattgcttgtgcaacagataaccacgaagctcttcatatactgttcaaa
catggtgcacagttttgcagccaaaacaagttaggacattttcctattcatgctgctgct
tttgctggggcaaaacaatccatgcaggttattcttcaaaggggagtggagatgggtcat
tccattgaggcacatattaattatgtggacaagtcctgcaacagccctattcatctggct
cttcgtggaggaaaccttgaaataatcaagctctgtatggcatatggtgcgaaaataaac
agacaacaacaatgtgataaatcaacagccctccactcagcctgtacacaaggggccact
gaggcagttaaggtcatgctctctgcctgtcagaacatctcggacatcatcaacatcacc
gacggatgcagccaaacccctctgcataaggcagccatctttgatcacaatgaactggca
gaatacctaatctcaaagggtgctgacattgacctcactgactacaaggggcattctcca
ttacttctggccacaagctgcggggcctggaggacagtgaacctactgctgtcccatggt
tgcaatttcacagtgaaggatatgagtggatgtaacttcatgcacctcaccatcatgcaa
ccaggggggctccggaaccttcctactgaatttttgcagcatgagtgtgtgcgagagctc
cttggtgatgaggacgatgagggctgtactcccctccactacgcctgcaaactgggtgtg
gtcaactcagtgaggagcatgctcggactggaggtgtcacctaaccacaagtccaaacaa
aagaagtctgctctacatttcgcagctgagtttgggaggataaatacctgctacagaatc
ctagaaaccatgacggacacccggctcctgaatgagggtgatgagaagtgcatgacccct
ctccacctggcatgcaggaatggccatgtccgagtggtggagctgctgctatgcagggga
gcactgtgccaaagtgattataaaggatgctcctgcctccatcacgctgcagcaggaggc
tacactcagacaatggacagtctcctgggatcacacatcaaactgctggacaaaacagat
gatgacgggaacacggcgctgcacctggccgcccgtgaaggccacactggcgccgtgcga
ctgctcctgaagagaggagcgcagatactgctcaacaagagtgatgcctccttcctgcac
gaggccatccacaactacaggaaagaggctgtcgaggtggtgctccagagtaacagatgt
gctgaagttcttggtgcattcaaccgccactccaccaagcgctgtgctgtcctggacatg
atcgaactgcttccagagaccttcaagcatctccttgacttgtgcataaaggagtcagag
gaggaccccaacagcatgaactactggattgagtataacttcaagtggcttcagtcacca
attcaagatgtgaagcaggcaaggatggacaaaggcctagactacaagccacttccagct
ctgaatgccatggtgcaccacaaccgtgttgatctattgactcatcctgtctgcagaaag
tacttagagatgaaatggaaagcgtacggtgtcaaagtacatctactaaacatggccgtt
tacatgctgggtctcctccctctgacctacctcattttgaacctgagacccattctcaaa
atggctgataacaacaccactactaatgaggtcactatgactaccacttcgttagacaag
caatgcaatattataaacttctgtctattcctgactctggcaatgaatctgtattcaatg
gggaaagaaatagtccagatatatcaacagaggacaggttacctacgcgatgtgaccaat
gcgctagactggctctcggcaatcacgtccgtggtgtttgtggtgacactgctgcaggac
atgaggactgcctggcactggcagataggagctctcgccgtgttctacaactggatgaac
ctcctgctctatctgcggcgctttgaacgctttgggatttacgtggttatgttccaagag
attgcaaagacccttgtgtgcaccagctcgatgtttatgtgtttgatacttgctgttgca
ttggcctttcacgccctgatgctcaagcagaaaaactttggcagcgtattgttgtcaata
atgcagacttctgtgatgatggtgggagagttaaactaccatgacaacatcctgaaaccc
tatttaaagggaaaccttccctttcccacactaacattcatcatctttattggatttgtc
ttactggcaccaattcttcttgtcaatcttttgattggtctggctgttggtgacatagct
gaagtccagaaaaatgctatcctcaagcaaatagctatgcaaattgaactgcacacaggt
ctggaggagaagctaccgtactggttcatgaagcgggcagaccgggctactgttagagtt
taccccaacagaggttttcaaaaggcatctgcacagttatctctaatccactccataatt
ggggatgaatcgcaggaagggaagacccggctcaacctcacctccagccaatccactcct
ctggcatgggagctggccaagcagaaatacagaataagagagatctccagcctcacagag
aagcagaataacctgctgaagctgatcatgcaaaaactggagatcaactcagagtcagaa
gacacagatgggcctgacagcttccactccaacatacactacctccactccaggacagac
aagtggactccagtcatcagagcagtgatggctaagagaacatag
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