Alosa sapidissima (American shad): 121707578 Help Entry 121707578         CDS       T11137                                  Symbol copa Name (RefSeq) coatomer subunit alpha   KO K05236   coatomer subunit alpha Organism asad  Alosa sapidissima (American shad) Brite KEGG Orthology (KO) [BR:asad00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:asad04131]     121707578 (copa)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:asad04147]     121707578 (copa) Membrane trafficking [BR:asad04131]  Endoplasmic reticulum (ER) - Golgi transport   Retrieval pathways    Coat protein complex I (COP-I)     121707578 (copa) Exosome [BR:asad04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    121707578 (copa)   Exosomal proteins of bladder cancer cells    121707578 (copa) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Motif Other DBs NCBI-GeneID:  121707578 NCBI-ProteinID:  XP_041946172 LinkDB All DBs Position 1:complement(46409440..46422542) Genome browser AA seq 1223 aa AA seqDB search MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE IRGLTGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH PNLNLFAAGHDSGMLVFKLERERPAYSVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK LALVSRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV ALEAAKALDDRSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP EKEMIPEVDSNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAAEMDMEAP GGEGWGEDAELHMDEDGFADAQDVLGDEAGVGKGEGGGWEVEEDLDLPPELELPAGAGGG AEDGFFVPPTKGMSPTQMWCNNSQLVVDHLLAGSFETAMRLLHDQVGVVCFEPYKQLFMQ TLSRGRTAYLGLPSLPCLRGHPLRNWKDGGAKGGLPAVGLRLADLIARLQQCYQLTTAGR FEEAVERFRVILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQ KRLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPEVAQQT RKILAACEKTLTDTHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPTYKGQVC RVTQATEIGKDVIGLRVSPLQFR NT seq 3672 nt NT seq  +upstreamnt  +downstreamnt atgttaaccaaatttgagacgaaatcggctcgtgttaaagggctcagtttccacccaaag agaccatggattcttgccagcttgcacaacggagtcattcaactgtgggattaccgcatg tgcaccttgattgacaaattcgacgagcatgacggcccggtcaggggaattgactttcac aagcagcagcccttgtttgtgtctggcggcgatgactacaaaatcaaggtatggaactac aagttaaggcgatgcctgttcacactgctcggacacctcgattacatccggactaccttt ttccatcatgagtatccctggattttgagtgcgtcagatgaccaaaccatccgcatctgg aactggcagtctcgtacttgtgtctgtgtcctgacgggccacaatcactatgtgatgtgt gctcagttccacccctcagaggacctggtggtgtctgctagcctggatcagactgtgcgc gtgtgggatatctctggtttgaggaagaagaacctctcgcccggcgccgtggagacagaa atccgaggcctcacaggggtggatttgtttggggcgtcggatgccgtagtaaaacacgtt ctcgagggtcatgaccgcggggtcaactgggccgccttccatcccagcatgcctctcatt gtctcaggagcagacgatcgtcaggtcaagatctggaggatgaatgagtccaaggcatgg gagttagacacctgcagaggacattacaacaacgtgtcctgcgctgtcttccacccccgc caggagctcatcctgtccaactcggaggacaagagcatccgcgtgtgggacatgtccaag aggactggggtgcagaccttccgcagggaccatgaccgcttctgggtgctgggagctcac cctaacctcaacctctttgccgcaggccatgacagtgggatgctggtgttcaagctggag agggagaggccagcttactctgtgtacggcaacatgctgtactatgtgaaggaccgcttt ctgcgccagctggacttcaacagtagcaaggacaccgctgtcatgcagctgcgcagtggc tccaagttccccgtgttcagcatgtcttacaacccagctgagaatgccgtcctgctgtgc actagagcgacgaatctggagaacagcacctatgatctctactccatcccacgtgaaagt gactcccaaaaccctgatgctcctgaaggcaagcgttcctctggtcttacggctgtctgg gtggccaggaacaggtttgccgttctggaccgcatgcactctctgctgatcaagaacctg aagaatgagattgtgaagaaggtgcaggtcccgagctgtgaggagatcttctacgctggg actggctccctgctgctgcgcgacgccgacggagtcacgctgtttgacgtgcagcagaag cgctcgctcgccaccgtcaagatcgccaaggtcaagtacgtggtgtggagtgccgatacc agccacgtggccctgctggccaaacacgccatcatgatctgcaacaggaagctggagagc ctgtgcaacatccatgagaacatccgcgtgaagagcggcgcctgggacgagagtggggtc ttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcacggcatc atccgcacgctggacctgcccatctatgtgacgcgtgtgcgggggaacagtgtgtactgc ttggaccgtgagtgccgccctcgtgtgctcaacattgaccccaccgagtatcgcttcaaa ctggccctggtcagccgcaaatacgaggaggtgttgcacatggtgcgcaatgccaagctg gttggccagtctatcatcgcatacctgcagaagaagggatatccggaggtggcgctgcac tttgtgaaggatgagaagacccgcttcagcctggctctggaatgtggcaacattgaggtg gcgctggaggctgcaaaggccctggatgaccgcagctgctgggaacgcctgggagaggcc gcactgctgcagggtcaccaccaggtggtggagatgtgctaccagaggaccaagaacttt gacaagctgaccttcctctacctaatcaccggcaacttggccaagctccgcaagatgatg aagatcgctgagatcaggaaagacatgagtggacactaccaaggagccttgtatctgggc gacgtcagtgagcgagtgcgcatcctgaagaactgtggacagaagtctctggcctatctg accgctgccacccacggcctggacgaggaggctgaggccctgaaggagacctttgacccc gagaaggagatgattcctgaggtggactccaatgcccagctgttgcagcccccacctccc atcaaccccctggacaccaactggcccctgctcaccgtctccaagggcttctttgagggg gccattgctgccaaaggtaaagccggtcagatggctgcagaaatggatatggaagctcca ggaggagaagggtggggagaggatgctgaactgcacatggatgaagatggctttgctgat gcccaggatgtgttgggtgatgaggccggcgtggggaaaggagagggaggcggctgggag gtggaagaggatctggacctgcccccagagctggagctgcctgctggagctggaggcgga gctgaagatggcttctttgtgccgcccaccaagggcatgagccccacccagatgtggtgc aacaactcccagctggtcgtggaccaccttctggccggatccttcgagactgccatgagg ctcctgcatgaccaggtgggcgtggtgtgcttcgagccctacaagcagctgttcatgcag acgctgtcacgcggacgcaccgcctacctgggactgccctctctgccctgcctgcgcggc cacccactgcgcaactggaaggacggcggtgccaagggtggcctgccggccgtaggcctg cgtctggccgacctcatcgcccgcctgcagcagtgctaccagctgaccacggccggacgc ttcgaggaggccgttgagcgcttccgtgtcatcctactttccgtgccgttgctggtggtg gacaacaagcaggagattgctgaggctcagcagctcatcaccatctgcagagagtacatt gttgggctcaccatggaaacagaaaggaagaagctgccaaaagacacccttgaccaacag aagcggctgtgtgagatggcggcgtacttcacacattgtaacctgcagcccgttcacatg gtgctagtgcttcgtacagctctcaacctcttcttcaagctacgcaacttcaagactgca gcgggctttgcacggcgcctgctcgaactcggtcctaaacccgaggtggcacaacagacc agaaagattttggcggcctgtgagaagactctgacagacacccaccagctgaactacgac ccccacaatccctttgacctgtgcgccgcctcgtacacgccactctaccgtggccggccg gtggaaaagtgccccctgtctggagcctgttactgccccacatacaagggtcaggtctgc agggtcacacaggcaacggagattggaaaggatgtgattggtctgcgtgtgagccctctg cagttccgctag

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