Alosa sapidissima (American shad): 121707600
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Entry
121707600 CDS
T11137
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1-like isoform X1
KO
K11981
E3 ubiquitin-protein ligase NRDP1 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121707600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121707600
04121 Ubiquitin system [BR:
asad04121
]
121707600
03029 Mitochondrial biogenesis [BR:
asad03029
]
121707600
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121707600
Membrane trafficking [BR:
asad04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121707600
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121707600
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121707600
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121707600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_interact
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-rbx1
zf-RING_UBOX
zf-Nse
zf-C3HC4_4
zf-RING_6
zf-RING_5
zf-C3HC4_3
Sina_ZnF
U-box
zf-ANAPC11
zf-RING_10
Sos7
zf-TRAF
TRAF3_RING
RING_XB3-XBAT31
YicC-like_N
DUF641
zf-TRAF_2
SlyX
LXG
BLOC1_2
Sina_RING
Motif
Other DBs
NCBI-GeneID:
121707600
NCBI-ProteinID:
XP_041946212
LinkDB
All DBs
Position
4:33746901..33754025
Genome browser
AA seq
318 aa
AA seq
DB search
MGYDTNRFQGHVDEDLLCPICSGVLEEPVQATDCEHAFCNACITQWISQQSTCPVDRSQV
TLAQLQPVPRIMRNMLSKLQLSCDNSAFGCTAVLRLSQLQSHLRECEHNPKKPVMCERGC
GLEIPKDELSQHNCVGHLRTLVQKQQGKIAELEKTASEHKHQLAEQKRDIQLLKAYMRAL
RTTNPSLQNLEETIEYNEILEWVGSLQPARVTRWGGMISTPDAVLQAVIRRSLVDSGCPP
SIVGDLIENAHERNWPGGLATLETRQMNRRYYELYVAKRIPGKQAVVVLACENQHMAEDM
ILEPGLVMIFAHGVEDIL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggggtacgacactaaccgcttccaggggcatgtggatgaagacctgttgtgccccatc
tgcagtggtgtgctggaggagcccgtacaggccacggactgcgagcacgccttctgcaat
gcctgcatcacccaatggatctcccagcagagcacctgccccgtggatcgctcccaggtc
acgctggcccagctgcagccggtgccccgcatcatgcgcaacatgctgtccaagctgcag
ctgagctgtgacaacagtgccttcggctgcacggccgtgctgcgactcagccagctgcag
tcgcatctcagggagtgcgaacacaaccccaagaagccagtcatgtgtgagcgaggctgt
gggctggaaattcccaaggatgagttgtcccaacacaactgtgtggggcacctccgcact
ttggttcagaaacagcaaggcaagatcgcagagctggagaaaacggcctcagaacacaaa
caccaactggctgagcagaaacgtgatatccagttactgaaggcctacatgcgagccctt
cgcacgaccaaccccagcttacagaacctggaggagaccattgagtacaatgagattcta
gagtgggtgggttcattgcagccagctcgtgtgacccgatggggaggcatgatctccacg
cccgacgctgttctacaggcagtcatccgacgctcgctggtagacagcggctgcccgccg
tccatcgttggcgatctgatcgagaacgcccacgagcggaactggccaggcggactggcc
acgctggaaacacggcagatgaaccgccgctactacgaactgtacgtggctaagcgcatc
ccgggaaaacaggcagtggtggtgttggcctgtgagaaccaacacatggctgaagacatg
atccttgagcctggtctcgtcatgatctttgcccatggagtggaggacattttgtag
DBGET
integrated database retrieval system
