Alosa sapidissima (American shad): 121707659
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Entry
121707659 CDS
T11137
Symbol
tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2 isoform X1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
asad03016
]
121707659 (tsen2)
Enzymes [BR:
asad01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
121707659 (tsen2)
Transfer RNA biogenesis [BR:
asad03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
121707659 (tsen2)
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SSDB
Ortholog
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
RecX_HTH1
Motif
Other DBs
NCBI-GeneID:
121707659
NCBI-ProteinID:
XP_041946296
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All DBs
Position
4:30283373..30288425
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AA seq
476 aa
AA seq
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MEAVFQAPKRRARVYEVYEAPLPVLTFDQDAAHRHHLVFKAELINNHVIVRHPDYIQSLY
SKGYFGKGILSRSRPEHSLSERWKNHGDLYLPIISHSRYQTQVQLAQEALQAQGLEEEVV
DQTLERLSQPVEFLVTESGKDQENGHAETPLSPHGQENAESYLDTTVHFLDSSSKAPSGN
ERLSDAYEGAGENPPEAKRPRRQGNPVHDPLASLYPEEPKQLDQKTLSQIRCLRHDDWIV
HCGCRLRDSQLEAATQNKAGVQGVEYVLVEEQDDNEESTSSLRNVNTRANGTGKLVCRIN
PFRITEYLQLSLEEAFFLVYALGCLSIYDHEEPLSIVQMWEMFRSMQPNFETTYVAYHYF
RSKGWIPKTGVKYGSDFMLYRKGPPFYHASYSVVVERVDESFKGATLRPFSWRSLAALSR
ITGNVSKELMFCYVVIPLNMAEEMLCSPECIKKIKVQEIILSRWISSRERTDQDEI
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgtttttcaagctcccaaacgacgtgcaagagtttatgaagtttatgaggcg
cctctgcctgtattaacattcgatcaggatgcggcacaccggcatcatcttgtattcaaa
gccgaacttatcaataatcacgtaattgtgaggcatccagactatatacaatccctgtac
agtaagggctactttggcaagggcattttgtctagaagcagaccagaacatagcctgtct
gagcggtggaaaaatcatggtgacctctatctccccatcatctcccactccaggtatcaa
acacaggtgcaattggcacaggaggctttgcaggctcaaggtttggaagaggaggttgtc
gatcagacccttgaaaggttatcccagcctgtggaattccttgtaacagaaagtggtaag
gatcaggaaaatggacatgcagagacccctctcagccctcatggacaggaaaacgcagag
tcatacttggacacaactgtacatttccttgattcttcatcaaaggcaccttctggaaat
gaacgtctcagcgatgcatatgaaggtgcaggtgaaaaccctcctgaggctaagaggcct
cgacggcaagggaaccctgtgcacgaccccttagccagtctgtacccagaggagcccaag
cagctagaccagaagaccttgtcccaaatcaggtgtctgaggcacgacgactggatcgtc
cactgtggctgtcggctgcgggacagtcagctggaggctgcgacccagaacaaagctggc
gttcagggtgttgagtatgttcttgtcgaggagcaggatgacaatgaggagtccacatca
agcctgagaaatgtaaatacacgtgccaatggcacagggaaattagtgtgccgaattaac
cccttcaggattactgaatacctacagctgagtttggaggaggcattcttcctggtctat
gctttgggctgcttgtcgatttatgaccatgaggaaccactgtcaattgtccagatgtgg
gaaatgtttcgttcgatgcagcctaactttgagaccacctatgtggcttaccattatttt
cgctccaaaggatggattcctaagacaggagtgaaatacggttctgatttcatgctctac
cggaaaggaccacctttttatcatgccagctactcagtggtggtggagagggtagatgag
tcctttaagggggcaacactgcgacctttcagctggcgctcactggcagcccttagcagg
atcactggtaatgtctctaaggagctgatgttttgctatgttgttattccgttgaacatg
gctgaagagatgctttgctctccagaatgcatcaagaagattaaagtgcaggagattatt
ttgagcagatggatatcctcacgagagcgcaccgaccaagatgaaatctag
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