Alosa sapidissima (American shad): 121707730
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Entry
121707730 CDS
T11137
Symbol
taf6
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121707730 (taf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121707730 (taf6)
03036 Chromosome and associated proteins [BR:
asad03036
]
121707730 (taf6)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121707730 (taf6)
Coactivators
SAGA/TFTC/STAGA complex
121707730 (taf6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121707730 (taf6)
STAGA complex
121707730 (taf6)
TFTC complex
121707730 (taf6)
SAGA complex
121707730 (taf6)
SLIK complex
121707730 (taf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CENP-S
TFIID-31kDa
Apc5_N
Motif
Other DBs
NCBI-GeneID:
121707730
NCBI-ProteinID:
XP_041946422
LinkDB
All DBs
Position
4:37943633..37946358
Genome browser
AA seq
635 aa
AA seq
DB search
MADERRQKQCTVVLPTESMKVMAESVGVQLQEESCAALSEEVSYRIKEIAQDALKFMHHG
KRRKLTTSDIDHALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINTP
LPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKAESTEPLKAVKPGQEEEGSIQGK
GQGATSAEGKGKKEAMMRIKPRSTHELSVEQQLYYKEITEACVGSCEAKRTEALQSVATD
PGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELLPAVV
TCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSLLDERTQ
WTTRYGAIAGLSELGPDVIKTLILPRLSMEGARIKAVMEGPVVSNIDKIGADHVQSLLLK
HCASVIAKTRPLPDIVDQYRADYGYLGPVLCSHVVKARAQAALQAQQVNRTTLTITQPRP
SLTVAQSGLGGSGGTRPPSIIKVPSSLTLMSTRPGTPTQPSPPATKYIVMQTSAGAASTQ
QVITLTSAQSGSPVTSTVSSTPTSLQPLVKVESGGAGASRPLQKYIVVSLPTSSASSLDK
GAGGAPHVTTSPLTMEPSVKMERSESPAASTQSPH
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgagcgcagacagaagcaatgcactgttgtgctccccaccgagtcaatgaag
gtgatggcagagtcggtgggtgtgcagctgcaggaggagagctgtgcggccctgagcgag
gaagtaagttatcgtatcaaagaaatagcgcaagatgctctcaagtttatgcatcatgga
aagagacgaaaactaaccacaagcgacattgatcatgctcttaaacttaaaaacgtggag
ccgctgtatggcttccaatcacaggagttcattccgtttcgttttgcaagtggtggagga
cgcgagcttcatttctatgaagagaaggaggttgaccttagcgatataatcaacacaccg
ctcccgcgagttccgcttgacgtctcgctaaaggctcactggttaagcattgaaggagtt
cagccggctatccctgagaaccctccccctgctccgaaagagcaacagaaagccgagtcc
acagaacctctcaaagctgtcaaaccgggacaagaagaagagggctctattcagggcaag
gggcagggcgccacctctgccgagggcaaagggaagaaagaggccatgatgcggatcaag
ccccgcagcacccacgagctgtccgtggagcagcagctgtattacaaggagatcacggag
gcatgcgtgggctcgtgcgaggccaagcgaaccgaggccctccagagcgtcgccacggac
cccggcctgtaccagatgctcccacgcttcagcacgttcatctccgagggcgtccgcgtg
aacgtggtgcagaacaacctggccctgctcatatacctgatgcggatggtcaaggcgcta
atggacaaccccaccctctacctcgagaagtacctgcacgagctcctgccggccgtggtc
acctgcatcgtcagcaagcagctgtgcctgcggccggacgtggacaaccactgggccttg
agagacttcgccgccaggctcatggcacagagctgcaagacgttcagcaccaccaccaac
aacatccagtcccgcatcaccaagaccttcaccaagagcctgctggacgagaggacccag
tggacgacacgctacggtgcgattgcgggcctctccgagctcggccccgacgtcatcaag
acgctcatcctgccccggctgtccatggagggtgcgcgcatcaaggccgtcatggagggg
cctgtcgtttccaacatcgacaagatcggcgcagaccacgtgcagagcctgctgctgaag
cactgcgccagcgtcatcgccaagacccggccgctgccggacatcgtggaccagtaccgg
gccgactacggctacctggggcccgtgctgtgctcccacgtggtgaaggcacgggcgcag
gcggcactgcaggcgcagcaggtcaaccgcaccacgctgaccatcacgcaaccacggccc
tcgctcaccgtggcacagtctggcctggggggctcaggtggcacacggccgcccagcatc
atcaaggtgcccagctcgctcacgctcatgtccacgcggcccggcacgcccacgcagccg
tcgccgccggcaaccaagtacatcgtgatgcagacgagcgcgggggcagcgtccacccag
caagtgatcacactgacgtcggcgcagtcgggctcgccggtcacgagcacggtgtccagc
acgcccacctccctccagccgttggtcaaggtggagtcggggggcgcgggcgcgtccagg
ccgctccagaagtacatcgtggtgtctctgcccacgtcgtccgcctcgtcgctggacaaa
ggcgccggaggggcccctcatgtcaccacctcgcccctcaccatggagcccagcgtcaag
atggagcgttcggagtcgcctgcggctagcacacagtccccgcactga
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