Alosa sapidissima (American shad): 121708548
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Entry
121708548 CDS
T11137
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04270
Vascular smooth muscle contraction
asad04625
C-type lectin receptor signaling pathway
asad04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121708548 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121708548 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
121708548 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121708548 (arhgef12b)
Membrane trafficking [BR:
asad04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121708548 (arhgef12b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121708548
NCBI-ProteinID:
XP_041947210
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Position
5:36599307..36649624
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AA seq
1490 aa
AA seq
DB search
MSGIQSTITDRFPKKTTRTGSILGKDHPPDKKSKSDKPAVSSSNEFDPTDALVQNSSLSS
SSSSSSCVVADGKPESCGLVQRCVIIQRDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQ
TGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEGEGDSGSLSLS
SPHSPGPTTGERSSTSSSPSDRITSPLPAWEENSTAYNQKVDILHLQKMLTKQQQNHQAM
KEECSRNPSPKLLKEIQEAKKHITLLQGQLSKATAAAQDGGVSSQLSEADVDEVGGGESE
QPLSWATDSAPDGSWPNSTAPPASPYPNAALPDSPCQRETPCHSPKTTPRGSLTSCPSPD
TEDPPELDSQSSLGSPMSRQPPQIIGAEDDYFGDTEQDQINGQCSCFQSMELLKSRPAHL
AAFLHHVVSQFDPAPLLCYLYADLYKQTNPKETRRIFTDLHTYFMDRTANLKVAVPESIS
AELEKRRAELLPEETHRQYVQLLQDTLLTDIQKNLEDFRQKRSMGLTLGEAELTRLDAET
GRNRVALERERSCAEHIISKIEEVLLTSQPTEEEKCSTMQYVILTYMKHLGVKVKEPRGL
EPKPKRINFNLPKIKVKGIKPEKEGEEKVKKARFPPFLGPPRRPSRIDPPSIGKAMEMNK
QRPQKQLSQPALSVTDQSDSSSPLSAPAGLGGGRLRSSQSSDGSDTTHVSTIMTSPPHSA
PAAQGSDATSRDADSGSTPSSAQARLGDGVHLGDPQDGSTPGASTHFDFGPCALEQLQEE
EPETDRTQDGGTPKPARRMDPLGSGEVHSEDDQGGEVELEQDPSNWQMSVPREILQGLAS
QEIKRQEVIYELFYTERTHLRMLRVLDNVFYQKLSRESILPPGDVKHIFTNLEEIVQLHA
SILEQMMATRKKNESSVISLIGDDLLTWFSGTEEEKIKQAVGTFCSNQPFALELIKSRQK
KDQRFTSFMQEAESNQLCRRLQLKDIIPMEMMRLTKYPLLLENIARNTEDLEEKDKVKRA
AECCRNILNHVNQAVKEAENKQRLEDYQRRLDLSSFKQSENPMISEFKNLDLTKRKLVHE
GPLSWKVNKDKTIELYTLLLEDILVLLQRQDERLILKCHSKNLAGTADTKHIFSPIIKLS
TVLVRSVATDNKSFFVLSMSDSGAQIYELMAQTVSEQRTWQCLITQRADSMKMKQHNIIP
LPQTDGDRETVEMINSAGVQKLNKDSDRISTGSIQSPEKDVASTQGVLDTPPPGSNPFES
SKSEDEEEEEESLTVPLEEEGPFLDTDLADKEAFIKPGSCPPVVLDDEEPEAFGFPSSRA
DEALKTLAALRQLLITHMSAEEGERAEGAEERTDMSAPPPGPKDNGGPAPPAENSSERTA
SSQAAAELPSTNTALFETPEYALLLEGYGGFEESSTDDDIQGADSDVDVTKLLSSSQTTG
VPNLSRQVMTHIRLLQANLQHLKEVEIKYHELRQSLAEAATDTVESKDQS
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcatacagtccacgataactgacaggtttcccaaaaaaactaccaggacagga
agtattctcggcaaggaccatcccccagacaagaagtcaaagagcgacaagccagctgtc
tcctcctccaatgagtttgatcccacagacgcgctggtgcagaacagcagcctcagcagc
agtagcagcagcagcagctgtgttgtagccgacggaaagcccgagtcctgtgggcttgtt
cagcgttgtgtcatcattcagagagatgagaatggcttcggcctgaccgtcagcggagac
aacccagtgtttgtgcagctcgtcaaagaagatggagctgccatgcgagctggtgtgcag
acaggagacaggatcataaaggtcaatggaacattagtaacacattcaaaccatgtggaa
gttgttaagttgataaaatcgggctcctatgtggccctcacggtgctcggccggcctcca
gggctgcctcagatcccactgtccgagggtgagggtgactcggggtccctctccctctcc
tccccgcactcccccggccccaccacaggggagcgctcctccacctcctccagcccctcc
gaccgcatcacctccccccttcctgcctgggaggagaacagcacagcgtacaaccagaag
gtggatatcctgcacctgcagaagatgctgacaaaacagcagcagaatcaccaggccatg
aaggaggagtgcagcaggaacccctctcccaaactactgaaggagatccaggaagccaag
aagcacattacactgctccagggacagctgagcaaggctacagcagctgcacaggatggt
ggggtatcatctcagctgtcggaggctgacgtggacgaggtgggcggtggcgagagtgag
cagcctctgtcctgggccactgactcagcccccgacggctcctggcccaacagcactgcg
cctcctgcctctccgtacccaaacgctgccctcccagatagtccgtgccaaagagagacc
ccctgccacagtccaaagaccactccccggggcagcctgacctcctgcccctcgccagac
acggaggacccgccagagctggactcacagtctagtctcggcagccccatgtcacgccaa
ccccctcagatcatcggtgccgaggatgactacttcggcgatactgaacaggaccagatt
aatgggcagtgcagctgttttcagagcatggagctcctgaagtctcgacctgcgcacctg
gctgcctttctccatcacgtggtctcccagttcgaccctgcgccactgctgtgctacctc
tatgctgacctgtacaagcagaccaaccccaaagagacacgacggattttcacggacctg
cacacttatttcatggaccgaacagcgaacctaaaggtagctgtgcctgagtccatctca
gctgaacttgaaaaaaggagagcagaactgctcccagaggagactcacaggcagtacgtg
cagctgcttcaggacaccctcctgacagacattcagaagaacctggaagacttcaggcag
aagcgcagtatgggcctgacgctgggcgaggctgagctgacgcgcctggacgcagagact
gggaggaaccgcgttgcgctggagagggagcgctcctgtgctgaacacatcatctccaag
atcgaggaagtgctattgacgtcgcagcccacagaggaggagaagtgcagcacgatgcag
tatgtgatcctcacctacatgaagcacctgggggtgaaggtgaaggagccgcgaggccta
gagcccaaacccaaacgcatcaacttcaacctgcccaagatcaaagtgaagggcatcaag
ccagagaaggaaggtgaggagaaggtgaagaaggccagattcccccctttcctgggtcct
cccagacggcccagtcgcatcgacccgccctcaatcggcaaagccatggagatgaacaag
cagcgtcctcagaagcagctctcgcagccggcgctcagcgttactgaccagtccgactca
tcgtcgccgttgtcagcgccagcggggttgggaggaggacgcctccgtagcagccagtcc
agtgacggctcggacacgacacacgtcagcaccatcatgacctccccgccacacagtgcc
cccgctgcacagggctcggatgcaaccagccgcgacgccgactcaggctccaccccctcc
tcggcccaggccagactcggggacggcgttcacctcggtgacccccaggacggatccacg
ccgggcgccagcacccactttgactttggcccttgtgccctggagcagctgcaggaggag
gagccggagacggacaggacccaggacggaggcacgccgaagccagccaggaggatggac
ccgcttggctcgggcgaggtccacagtgaggatgaccagggtggtgaggtggagctggag
caggacccctccaactggcagatgtcagtcccccgagagatcctgcagggactcgcctct
caggaaatcaagcggcaagaagtcatttacgagctgttctatacagagaggactcacctg
cgtatgctgcgtgtccttgacaacgtgttctatcagaagctgagcagagaaagcatcctc
cctccaggcgacgtcaagcacatcttcaccaacctagaggaaatcgtccaactacacgcc
tccatattagaacagatgatggccacccggaaaaagaatgaaagttcagtcatcagtttg
attggagatgatctgctcacatggttcagtgggacggaggaggagaagatcaagcaggcg
gtgggcaccttctgcagtaatcagccctttgctctggagctcatcaaaagcaggcagaag
aaagaccagcgcttcacctccttcatgcaggaggccgagagtaaccagctgtgccgtcgg
ctccagctcaaagacatcatccccatggagatgatgcggctcaccaagtaccctctgctg
ctggagaacatcgccagaaacaccgaggacctggaggagaaggacaaagtcaagagagct
gccgagtgctgcaggaatatcctgaaccacgtcaaccaggcggtgaaggaggccgagaac
aaacagagactggaggactaccagagacggctggatctatcctcgtttaagcagagtgag
aatcccatgatctccgagttcaagaatctggacttgaccaagaggaagttggtgcacgaa
ggaccactgtcatggaaagtcaacaaagacaagacaatagagctgtacacgctgctgctg
gaggacatcctggtgctgctgcagaggcaggacgagcggctcatcctcaagtgccacagc
aagaacctggccggcacggccgacaccaagcacatcttcagccccatcatcaagctcagc
accgtgctggtgcgctccgtcgccacagacaacaagtccttcttcgtgttgtccatgtcg
gacagcggtgcccagatctatgagctgatggcacagaccgtgtctgagcagagaacgtgg
cagtgtctcatcacccagagggcagactccatgaagatgaagcagcacaacatcatacct
ctaccccagaccgatggtgaccgcgagactgtggagatgatcaactccgctggcgttcag
aaactcaacaaagattccgaccgcatctcgaccggcagcatccagtccccagaaaaagac
gtagcatccacccagggggttctggacacgcctcctcctgggtccaacccctttgagagc
agtaagtcagaagatgaggaggaggaagaggagtcactaacagtgccactggaggaagag
gggccattcctagacactgacttagctgacaaagaggccttcatcaagcctgggtcatgt
ccgccggttgttctggacgatgaggagcctgaggcctttggctttccctcctccagagct
gatgaggccctaaaaacattggcagcgctgcggcagcttctcatcacccacatgagtgct
gaggagggggagcgggccgagggggcagaggagcgcacagacatgtccgcacctccgcca
ggccccaaggacaacgggggcccagcaccacctgcagagaacagctctgagaggacagcg
tcctcgcaagcagccgcagagttgccgtctaccaacacagccctatttgagacgcccgaa
tacgctcttctcctagagggatacgggggttttgaggagagcagcactgacgatgacatc
caaggggccgactcggatgttgatgtgacgaagctcctctcatcgtcacagacaacaggc
gtacccaacctcagccggcaggtcatgacccacatccgcctgctccaggccaacctgcaa
cacctcaaggaggtggagataaagtatcacgaacttcgccaaagcctcgccgaagcagct
actgacacagtggagagcaaagaccagagttag
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