Alosa sapidissima (American shad): 121708802
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Entry
121708802 CDS
T11137
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121708802 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121708802 (patl1)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121708802 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
121708802 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
121708802
NCBI-ProteinID:
XP_041947653
LinkDB
All DBs
Position
1
Genome browser
AA seq
776 aa
AA seq
DB search
MFRFQSLDEDCTLEEEEEGQVEEEDDIDQFNDDTFGAGAVDDDWQEEHARLAELDERVRD
VFAGGDASNASLPPPPGSVPHPSSLPRPSASTLPPPGLEERRGGDLAESLTRLLLGSDPA
IAGVGAAEPDHSRFPPMSQAQVPLSGLPAPHPSLLSYQQHQHLLHRGGTPLPQVNSHSIW
ENNMGFGPVSVSPGLVTHMEDSPLMSIIKEVGLPKRPPPIRGEDGLDLSERVPPPRSSSP
VIGSPPVRAVPIGTPPKQPLSHTLNQQIHCPTAVHVRAPIQHRFPPPFPERLSPNTLLNI
AIASTSFQNSPLCRPPFPAGVGPVLSQIQRAQLLNSQVGPFSRGGPAPPMLPGGGGGFRP
FFSQPPPRVGHHVPPPNHNPIRHNTTHLHPQHRRMLTQRMQSRGDRGGRVGDRRSRDPYS
NLMTQKEKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRLERDKDSIRKEPTTKLITP
QVAKLEQTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILY
TVEKMYSLLLEVQDFEKKFLQTPEEQREALLEQHKTHTLQLYNSLKEKEWEDRVSDEQCL
MIMSVRKGKRLMSRLLPFLPPPQAAAVVMGIARNLPALAKKDKHDQQVLCWLVEPVAVVI
QSMSSSALTDLLQELQGSEGQLPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRW
TELVFSVTRELLKVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtctctggatgaagattgcaccctggaggaggaagaggaagggcag
gtagaggaggaggatgacatcgaccagttcaatgatgacacatttggagccggtgctgtt
gatgatgactggcaggaggaacatgctcgcctggcggagctagatgagagggtgcgagat
gtgtttgccgggggcgatgcatccaacgcctcactaccacctccgccgggcagcgtcccg
cacccctcgtctttgccccggccctccgcctccacactgcctcctccaggcctggaagag
cggcgcggtggggatctggccgaatccctaacccgtctactccttgggtcagatcctgcc
attgctggagtgggcgctgcagaaccggaccactcccgcttcccgcccatgtctcaagcc
caggtacccctctctgggctcccagctccacacccttcattgctaagctaccaacagcac
caacacctcctgcatagggggggaacccccttgccacaggtgaactctcacagtatatgg
gagaacaacatgggatttggacctgtgagtgtttctcctggactggtcacgcacatggag
gacagtccactgatgtccattattaaggaggtggggctacccaagagacccccgccaatc
aggggtgaggatggcctagacttatcagaaagggtgccgcccccccgctcatcctcacca
gtcatcgggagccctcctgtgagggccgtgcccattggaacccctcccaaacagccactg
agtcacaccctcaaccagcagatccattgccctactgcggttcatgtacgagccccaatc
cagcaccgtttcccccctcccttccctgagcgcctctctcctaacaccctcctcaacatc
gctattgcctccacgtcttttcagaactctcctctgtgtcggcctccgtttcctgctggg
gtgggaccggttctctctcagatccagcgggcccaactgctcaactcccaggtggggccg
ttttctcgaggtggacctgctcctcccatgttgccaggcggaggtgggggttttagaccg
tttttcagccagcctcctccccgagtgggacatcatgtcccccctcctaaccacaacccc
atccggcacaacactacacacctccacccccagcaccgccggatgcttacacagaggatg
cagagcaggggtgaccgtggcggtcgagtaggggatcggcgtagcagggatccctacagt
aacctgatgacccagaaagagaaggagtgggtggcgcgcatccagatgatgcagctccag
agcactgatccttacctggatgactactactatcagaactattatgagaagatggagaag
cgtctggagagggacaaagacagtatcaggaaggagcccaccaccaaactgatcacccct
caggtggccaaactggagcagacataccggccagttcagtttgctggctccctaggaaag
ctcaccgtctcaagtgtgaacaatcccaggaagatgattgatgcagtggtgaccactcgc
actgatgatgaggagaagagggaaaagcaggtgtggaacaagaggaggcagatcctctac
actgtggaaaagatgtacagtctgctcctggaagtccaggactttgaaaagaaattcctg
cagactccggaggaacagagagaggccctgctggagcagcacaagacccacacactgcag
ctctacaactccctcaaagagaaggagtgggaagacagagtcagtgatgaacagtgcctc
atgatcatgtctgtgaggaagggcaaacgcctcatgtctaggctccttcctttcctgccc
cctcctcaagctgctgctgttgtcatgggcatcgcccgaaatctgccagccctggcaaag
aaagacaaacatgaccagcaggtcctgtgctggttagttgagccagtcgccgtcgtaatc
cagtccatgtccagttccgccctcacagacctcctgcaggagctgcaaggcagcgagggt
cagcttcccagagtactgcaaaataagtttggcgtgacactgctctacctaattctgagt
gagggggagcgaatgcagagctctgatcccaactgtcagctaatggatgataatcgatgg
acagagttggtgttctcggtgactagagagctgttgaaagtcccctcgtcatcgctctcc
cctcctctcttcacacctcccaaccttctctctctattctctcgctatgtagaccgccag
aggctggagctgttacaggagaaattacagatcactgcattatccaggtag
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