Alosa sapidissima (American shad): 121709078
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Entry
121709078 CDS
T11137
Name
(RefSeq) transcription elongation regulator 1-like isoform X1
KO
K12824
transcription elongation regulator 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121709078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121709078
Spliceosome [BR:
asad03041
]
Complex A
U1 snRNP components
U1 related factors
121709078
Complex B
121709078
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW_TCERG1
WW
Motif
Other DBs
NCBI-GeneID:
121709078
NCBI-ProteinID:
XP_041948078
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Position
5:complement(11642001..11661448)
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AA seq
1095 aa
AA seq
DB search
MADNVEGEGVGFNENRMAQPQSLRFRTPAPPPTPVMRNPPPLLRPPPPPFGVIRGPPPPP
RPPFGRPPFDPSMPPMPPPGGLPPPMGPPHLQRPPFMPPPLSNMPPPPGMIFPPGMPPVP
SAGAPKLPPSEEIWVKNTTQEGKVYYYNVRTRESAWTKPEGVKIIQQSELTPLAASQQAA
AAAAAAAAAGVAMVTSPGSSVSNTTTNANGGMSSVQSVSTTAPISVSPSLSSTQAPSPSR
NLSSSPELATSPAPSLPPPGPSPAHTEMPPVASVPSTGGVTPVTVVSVSGVPASMTQVQT
VPLMPQSLPGTLPHSVPQPTATVPAFPPVMVPPFRVPLPGMHIPLPAGGGPILSVGRPPV
GENSPQAFTHSHLTKGLLVFRPVHSHSSYPGMLPGMGPPLVPMVHPQLTIAATPATLAGT
LPLPEWSEYKTVDGKTYYYNNRTLESTWEKPLELREKEKEAEKAKERQAAEDSEDVDMAD
QEDLVEPKVEIKEEPKDEEMTEAEKAAQRAKPVASNPIPGTPWCVVWTGDDQVFFYNPTS
RISLWDRPSELVGRADVDKYIQEPPHKKTSEDGPKPPVITKEIKEEEPAREESVEEEPVQ
AKRRKKEEVKEADLEKEAALEAELKAARERAVVPLDVRMTQFRDMLLERGVSAFSTWEKE
LHKIVFDPRYLLLNSKERKQVFDQYVKTRAEEERKEKKNKLMQSKEDFRKMMEDSRLHVR
MTFSEFAAKHARDTRFKAIEKMKDRETIFVEFMTALRKKEKEDSKNRVEKVKQDFFDLLS
DHHIDVQQRWAKVKDKVETDPRYKAVESSAAREDLYKQYVEKQAKNMDAEKEKELERQSR
IEASLREREREVQKARSEQTKEIDREREQHKREEAIQHFKALMSDMVRNTDVSWAETRRN
LRKDHRWESSSLLERDEKEKLFNEHVEALTKKKKEHFRQLLDETALVRQSDNTAQETSRS
AVQNINTITLTTTWKEVRKIIKEDPRCIKFSSSERKKQREFEDYIKDKYIIAKADFRTLL
KETKFITYKSRKLIQESDQHLKDIEKVLQNDKRYLVLDCVPEERRKLINFYIEDLDRRGP
PPPPTASEPTRRSTK
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgtggaaggagaaggtgtgggattcaatgagaacaggatggcgcagccg
cagtctctgcgattccgcacccctgctcctccccccacgccagtaatgcgcaatcctcca
cccctgttgagacctccacctccacctttcggtgttataagagggcctcctcctccaccg
aggcctccattcggacgcccaccttttgatccaagcatgccacccatgccaccacctgga
gggttgcccccaccaatgggaccccctcatttgcagaggcctcctttcatgcctccgcct
ttgagcaacatgcctccacctccaggaatgatatttcccccaggaatgcccccagtccct
tcagctggggcacctaagctacccccatcagaggagatctgggtgaagaataccactcaa
gagggaaaggtctattactataacgttcgcacgcgggagtcagcctggaccaaacctgaa
ggtgtaaagatcatccagcaatctgagctcactcctctggcggccagtcagcaagcagca
gctgcagcggcagcagcagcggcggcaggggtcgctatggtcaccagccctgggagcagc
gtcagcaacaccactaccaacgctaacggcggcatgagcagcgtccagtcagtgagcacc
acggccccaatcagcgtctccccatccctaagctccacccaggccccctcgcccagccgc
aacctcagctccagccccgagctggccaccagtccggctccatcgctgcctccacctggg
ccaagtccggcccacaccgagatgcctcctgtagcctctgtgccctccaccgggggagtg
acacccgtcaccgtggtgagtgtctccggggtaccagcatcgatgacccaggtgcagacg
gtccccctgatgccccagagtctcccggggaccctgcctcactctgtgccccagcccacc
gccaccgtgccagccttccctccggtcatggtgcctccgttccgagtgcccctgccaggg
atgcacatccctctgcccgcgggagggggacccatactgtctgtggggagaccgccggtg
ggtgagaattcgccacaagccttcacccactcacacttgacgaagggcctgcttgtcttc
cgtccagtccattctcactcatcttacccaggtatgctgccaggcatgggcccacctttg
gtacccatggtccacccccagctgaccatagcagctacacctgcgacactggcgggtacc
ctacccctaccagagtggtctgagtacaagacagtggatgggaagacgtactactacaac
aaccgcacactggagtcaacctgggagaagcctttggagctgagggaaaaagaaaaggaa
gccgagaaagccaaagagaggcaggctgcggaggactctgaggatgtagacatggctgat
caggaggacctcgtcgagccaaaggttgagataaaagaggagccaaaagacgaggaaatg
acagaagcagagaaagctgcacaaagagccaagcctgtcgcttcaaacccaatccctgga
accccctggtgtgtggtttggacaggtgatgaccaggtgttcttctacaacccaacctct
cgcatctccctgtgggaccgaccgtctgagctggttggccgagccgacgtggataagtac
attcaggagcctccacacaagaagacttctgaggatggacccaaaccacctgtcatcacc
aaggagataaaggaggaggagccggcccgagaggagagtgttgaggaggagccagtccag
gccaaaaggaggaagaaggaggaagtgaaagaggctgacctggagaaagaggcggccctg
gaggccgagctgaaggcagctcgggaacgggccgtcgtgccgctggatgtgcgcatgacg
cagttccgggacatgctgctcgagagaggggtatctgccttttccacctgggagaaagag
ctgcataagatagtgttcgaccctcgttacctcctcctaaactcaaaggagagaaaacag
gtctttgaccagtatgtgaaaacccgtgcggaggaggagcggaaggagaagaagaacaag
ctgatgcagtccaaggaggacttcaggaagatgatggaggactccaggctgcatgtccgg
atgacgttcagcgagttcgccgccaagcatgcgagagacacccgctttaaggccatcgag
aaaatgaaggaccgcgagaccatcttcgtagagtttatgaccgccctgagaaagaaggag
aaggaggacagcaagaacagagttgaaaaggtcaagcaggactttttcgacctgctgagt
gaccaccatattgacgtgcagcagcgctgggctaaggtgaaggacaaggtggagacagac
ccgcgctacaaggccgtggagagctctgctgcccgcgaggacctctacaaacagtatgtg
gagaagcaagcaaagaacatggacgctgagaaggagaaggagctggagaggcagtctcgg
attgaggcgagcctacgggagcgcgagcgcgaggtccagaaggcccgctccgagcagacg
aaggagattgaccgggagcgcgagcagcacaagcgagaggaggccatccagcacttcaag
gccttgatgtctgatatggtgagaaacacggacgtgtcgtgggcagagacgaggcggaac
ctgcggaaggatcaccgctgggagtcatcctcgctgctggagcgtgacgagaaggagaag
ctcttcaacgagcatgtggaggcgctcaccaagaagaagaaggagcacttcaggcagctt
ctggacgagacggccttggtgagacaatcggacaatacagcacaggaaacctcacgttca
gctgtccaaaacatcaacactatcaccctgacgaccacctggaaggaggtgaggaagatc
attaaggaggacccccgctgcatcaagttctccagcagcgagcggaagaaacagagggag
tttgaagactacatcaaagacaagtacatcatagccaaggctgacttcaggactcttctg
aaggaaaccaagtttatcacatacaagtccaggaagctgatccaggagtctgaccagcac
ctgaaggacattgagaaggttctgcagaacgacaaacgctacttggtgctggactgtgta
cctgaggaacgccgcaagctcatcaacttctacattgaggatctagatcggcgcgggccc
ccgcctccccccaccgcgtctgaacccactcgccgctccaccaagtga
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