Alosa sapidissima (American shad): 121709129
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Entry
121709129 CDS
T11137
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
asad
Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121709129
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
121709129
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
121709129
NCBI-ProteinID:
XP_041948195
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All DBs
Position
5:complement(16917678..16984015)
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AA seq
1797 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPMLFPVTEEDPILGSFSRC
LRSDVLSVWRRSQRQGRRELWLFWWGDDPNFSELIHNELTAEDDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRLGKWFVKPYEKDEKPINKSEHLSCAFSFFLHGDSNVCTSVEI
NQHQPVYHLSEEHLTLAQQASTPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSAKENAEDKTEDADWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPIVVPVGASH
GSAVYSGGHQVPVSQRDPAISSVTLTPPTSPEEAQTVDSQSAQKWMKLSSVMDGFSTDTT
SHHGGKIPRRMAGQVVERVWQECNLNRTQNKRKFSVTTNGTSEADVPEKVGAWDFVEATH
RSTCLCSRHKNLKQRAGVPPGQPPSAGQAPQPPTKHKTGEKPEKAEKQQKRPQTPFHHRN
STCDDVALEPDASGQRLALRGSDGSTSAAAAAARFPGLRAAEVGSVSSKPPQLHGGATGG
GGGSVSSGPGGPSEMGGSPQPPPLSPHPCGDRSEEASSDALKNPSTPHSQHFYPAPPSSE
PCLLPQQKGASGGGGGGGGDEPRLEPPFHSAAAAAYPEPLGPTVYVGAAVSMEEEVGGGS
GGGGSHAPWRFFNLPRRKNAEFPTPALPGDKLREEAALGQDGIVSVTELMATSKRPLKVS
EERVQMYVQQRNKYLSSATISDGDLEPEVDPYAFEDGDVKFFFSNERKDKSGREREPGKK
HKGEDGGSGSSDDPQRTTPLSRTAPASLIHDKDLAVSMNDLDNLFNSDEDELTPGARRGV
NGTDDKFGAKEPKPATLDPVSCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKDYGSNDP
GTGMTSLDGAAMLGGQFKMEVEESFCSPKPSEIKGPLTWQQFHKMAGRGSYGTDESPEPL
PIPTFLGGYEYDFVVLSPFGLPYWEKLLLDPFGSQRDVXYLVVCPDTDALLSGAKSFFKE
LTSVYESCRLGQHRPISKLHADGIVRVGGAAAKKLSDQPVSDWFLKAASGNNDSFAKLKL
FAQVCRHDLAPYLSAQQLDASLLSQPNPAPAASSQSSTAQSSGSTGSQGTTASASAGAVS
SNGAPGNNGSANAAGLASGTAGGTPASSNTSSSSSSSSSGPQGAGAMQSAKSSSFAPFGS
MGAQAGSMNQQTGGQNAGLPGDGTAGVNQTPAPTEPPESTMEKEKVGVPTDGDSHAITYP
PAIVIYIVDPFSYEDADGTSAHSSVWTLGLLRCYLELVQHLPPHIRNSISVQIIPCQYLL
QPVRSEERHIYAQHLKSLAFSVFSQCRRPLPASTNVKSLTGFGPGLALDTALKSPERPEC
LRLYTPPFILAPVKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLATCTDQFGELLE
TCIISIDVPNRARRKKGSARRVGLQKLWDWCLGLVQMTSVPWRVVIGRLGRIGHGELRDW
SILLSRRNLQSLSRRLKDMCRMCGISAADTPSILSACLVALEPQGSFVIMPDSVSTGSVF
GRSTTLNMQTSQLSTPQDTSCTHILVFPXSAFVQVATSNYTTENIDIAFNPINDGSDAIG
GIFDLLEQENEMVDPDIINILPASPTTSPVHSPGSHYHHGGDGSKGQSTDRMESHEETPN
ILQQPLALGYFVSTAKAGPLPDWFWSACPQAQNQCPLFLKASLHIHVSSVQSDELLHSKH
SHPLDSNQTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPIHFVVLNQMYNFIMNLL
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccattccaatctattc
tgtctggccgacctgacggggataaaatggaagcggtacgtctggcaggggcccacctcg
gcgcccatgctgtttccggtgacggaggaggaccccatcctgggcagcttcagccggtgc
ctccgctcggacgtgctgagcgtgtggaggaggagccagaggcagggccggcgcgaactc
tggctcttctggtggggcgacgaccccaacttctctgagctcatccacaatgagctgacc
gctgaggatgacggcgtttgggagagtggcctgtcgtacgagtgccgcacgctcctgttc
aaagccatccacaacctgctggagcgctgcctgatgaaccgcagctttgtgcgcctcggc
aagtggttcgtcaagccctacgagaaggacgagaagcccatcaacaagagtgagcacctc
tcgtgtgccttcagcttcttcctgcacggcgacagcaacgtgtgcaccagtgtggagatc
aaccagcaccagcccgtctaccacctcagcgaggagcacctcaccctggcccagcaggcc
agcacccccttccaagtgattctcagtccatttggactgaatgggacgctgacgggacag
tccttcaagctctcggacccgcccacccagaagctcatcgaggaatggaaccagttctat
cccatcagccccagcgccaaggagaacgccgaagacaagacggaggacgcagactgggag
gacgactccctggctgcggtcgaggtcctcgtcggtggtgttcggatggtgtaccctgcg
tgtttggtgctggtgccccagtcggacatccccatcgtggtcccggtgggggcctcccat
ggctcggccgtttattcgggtggccaccaagtgcctgtgtcccagcgtgaccctgccatc
tcgtcggtcaccctcaccccgcccacatcacctgaggaggctcagacagtggactctcag
tcggctcagaagtggatgaagctgtcttctgtgatggacggcttcagcacggacaccacc
agtcaccacggcggcaagatccctcgacgcatggccggccaagtggtggagcgcgtctgg
caggagtgcaacctcaaccgcacgcagaacaaacggaaattctcagtgacgaccaacggt
accagcgaggcggacgtcccggagaaggtcggcgcgtgggactttgtggaggccacgcac
aggtccacctgcctatgttccagacataaaaatctgaagcagcgagcaggcgttcccccc
gggcagccacccagtgcaggccaggccccccagccgcccaccaagcacaagacgggcgag
aagcctgagaaggcggagaagcagcagaagcgcccgcagacgccctttcaccaccgcaac
tccacctgcgacgacgtggccctggagccggacgcctcgggtcagcgcctggccctccgg
ggctccgatggcagcactagcgccgccgcggcggccgcccgcttccccggtctgcgggct
gccgaggtgggctccgtgtcctccaagcccccccagctgcacggaggagccaccggaggt
ggcggcggctccgtgtcctcgggccccgggggcccctcggagatgggcggctcgccccag
ccgcccccgctgagcccgcacccgtgcggcgaccgcagcgaggaggcgtcgtccgacgcc
cttaagaacccctccacgccgcacagccagcacttctacccggcgcccccgtcctccgag
ccctgcttgctgccgcagcagaagggcgcctccggtggtggaggcggcggcggcggcgac
gagcctcgactggagccgcccttccactcggccgcggcggccgcctaccccgagcccctg
gggcccaccgtctacgtgggcgccgccgtcagcatggaggaggaggtcggaggagggtcc
ggcggaggagggagccacgcgccgtggcgcttctttaacctgccgcggaggaaaaacgcc
gagttccccacgccggcgctgcccggcgacaagctgcgtgaggaggccgcgctgggccag
gacggcatcgtgtccgtcactgagttgatggccacgtccaagaggcctctgaaggtgtcg
gaagagcgcgtgcagatgtacgtccagcagcggaacaagtacctgtcgtcagccaccatc
tccgacggcgacctcgagcccgaagtggacccgtacgccttcgaggacggcgacgtcaag
ttcttcttctccaacgagcgcaaggacaagtcagggagagaacgcgagccggggaaaaag
cacaagggggaagatggtggatctggatcttcagacgaccctcagcgtacaacacccctc
agtcgcaccgccccagccagcctgatccacgataaagacctggccgtctccatgaacgac
ctggacaacctcttcaattcggacgaggatgagctcacgcccggtgccaggcgaggcgtc
aacgggaccgacgacaagttcggcgccaaggagcccaagccggccacgctggaccctgtg
tcctgcatcagctctgccgacctgcaccagatgttccccacgccaccttctctggagcag
cacatcatgggctactcccccatgaacatgggcagcaaggactacggcagcaacgacccc
gggaccggcatgacctcgctggacggggccgccatgctcgggggccagttcaagatggag
gtggaggagagcttctgcagccccaagccctcggagatcaagggtcctctgacctggcag
cagttccacaagatggctggacgaggctcgtatggcacggatgagtctccagagcccttg
cccatccccacgttcctgggtgggtacgagtatgactttgtggtgctgtcccccttcggc
ctcccttactgggagaagctgctgctggaccccttcggctcgcagcgagacgtgngctac
ctggtggtgtgtccagacaccgacgccctactcagcggagccaagagcttcttcaaggag
ctcacatccgtctatgagtcctgtcgtctcggccagcaccggcccatctccaagctccac
gcagacggcatcgtcagagtgggaggggctgccgctaagaagctctcagaccaacctgtc
agcgattggttcttgaaagcagccagtggcaacaacgactccttcgctaagctcaagctc
ttcgctcaagtctgcaggcacgacctcgctccatacctctctgctcagcaattggatgcc
tccctcctctcccagccaaaccccgcccccgccgcctccagccaatcctcaaccgcacag
tcctcaggctccaccggctcccagggcacgacggcgtctgcgtccgcgggcgccgtctcc
agcaacggtgcccccgggaacaacggcagtgccaacgccgcaggcctggcgtcgggcacc
gccgggggtacccctgcctcgtccaacacctcgtcgtcgtcgtcgtcgtcgtcctcgggc
ccccagggcgccggtgccatgcagtctgccaaatccagctccttcgcgcccttcgggagc
atgggcgcacaggcgggctccatgaaccagcagacgggcggccagaacgccggactcccc
ggagacggcacggccggcgtgaaccagacgccagcgcccacggagccccccgagagtacc
atggagaaggagaaggtgggtgtgcctacggacggcgactcccacgccatcacgtacccg
ccagccatcgtcatctacatcgtcgacccgttctcgtacgaggacgcggacggcacgtcg
gcccactcaagcgtgtggaccctcggcctgctacgctgctacctggaactggtgcagcac
ctgccgccccacatccgcaactccatctccgtgcagatcatcccatgtcagtacctgctg
cagcctgtgcggagcgaggagcgccacatctatgcccagcacctcaagtccctggccttc
tcagtcttctcccagtgccggcggccgctgcccgcctccaccaacgtcaagtcactgacg
ggcttcggcccgggcctggccctggacactgccctcaagagcccagagaggccagagtgc
ttgcggctgtacacgccgccgttcatcctggcgccagtgaaggacaaacagacggagctg
ggcgagacgttcggtgaggcctcgcagaagtacaacgtgctcttcgtgggctactgcctg
tcccatgaccagcgctggctgcttgccacttgcaccgaccagttcggagagctgctggag
acgtgcatcatcagcatcgacgtgcccaacagggcgaggaggaaaaaaggctctgcccga
agagtgggcctgcaaaagctgtgggattggtgcttgggtttggtgcagatgacatcagtg
ccctggagagtcgtgattggccgcctcgggcggataggacacggcgagttaagagactgg
agtattctgctaagcagaaggaatctgcagtctctaagccgccggctgaaggacatgtgc
aggatgtgtggcatctctgccgccgacacacccagcatcctcagcgcctgcctcgttgcc
ttggagccccagggctcttttgtcatcatgccagactcggtgtcaacgggttcggtgttt
ggccgcagcaccaccctgaacatgcagacgtcccagctgagcacccctcaggacacgtcc
tgcacgcacatcctggtgttcccancctctgccttcgtccaggtggccacctccaactac
accactgagaacatcgacattgccttcaaccccatcaacgatggatcagacgcaataggt
ggcatctttgacctcctggagcaggagaatgaaatggtggaccccgacatcatcaacatc
ctcccagcctcccccaccacctcgccggtgcactcgccaggatctcattaccaccacgga
ggagacggcagcaagggccagagcaccgatcgcatggagtctcatgaggagacccccaac
atcctccagcagcccctggctctcggctacttcgtgtccacggctaaagcgggcccactg
cccgactggttttggtcggcctgcccgcaagcccagaaccagtgccctctctttctcaag
gcctctctacatattcatgtatcctcagtgcagtcagacgagctgctccacagcaaacac
tctcaccctctcgactccaatcagacctcagacgtactcagatttgtgctggagcagtac
aatgccctgtcctggctgacctgtgaccctgccacacaggaccgccgctcctgtctgcct
atccactttgtggtgctcaaccagatgtacaacttcatcatgaacttgttgtga
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