Alosa sapidissima (American shad): 121709147
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Entry
121709147 CDS
T11137
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121709147 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121709147 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121709147 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
asad03029
]
121709147 (rb1cc1)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121709147 (rb1cc1)
Membrane trafficking [BR:
asad04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121709147 (rb1cc1)
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121709147 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
121709147
NCBI-ProteinID:
XP_041948221
LinkDB
All DBs
Position
1:complement(12196953..12220761)
Genome browser
AA seq
1627 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVADLKHAIQVKYKIATQHQVLVVNGGECMVADRRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLLKFDSAYMNYQQ
DFEDIKIKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSSSPVQRPDEEDEDRSAQSVT
PSAADTLRKSHELPPAFGAMGGASLQAADAPRGDGNMTDSSELKAALQEADSPEKAACTG
ISFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLGDCRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLE
RVRVVDALSTVPQMYCLAVVEVVRRKMFIRHYRAWANALVKDGKRFYEAEKAKRETFGKL
FRKSFLRNRLFRGLDSWPPLSFCTRKPRKFDFELPDISLEDLQYLKSCCPVEVQPFLRLA
PVPPSRVPTLCDFEPLNQHVQMLHQLVQAAQSVDEMSQTITDLLSEQRASCSQSGQRSSS
QFPRSESTTGTTPTSSKSLSSLTIPPPTCQALPVPAPLEDLSPDSIDAHTFDFETIGHPS
MDPVLQQGSLDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPTSPDMMVESLYSSVI
NAIDSKRILDTTTLERENSRMAALRLCTDRYRAAAEESQSGLRSVRDDLHHFRGLVAREQ
RDFSFALKTVTVEVREAVSRLRLCHEEEVRESHRSELDDLRHEHERQVQALTEELEANRG
IVRDVQRAMLELEGRMERKEKEIAQLEGDRERASEELRASHQQSLQELERQLLERAEEIK
AARSSRDELAGQLKALQQDADHWREEARQEMQEAEREHLRELEEALGQRHSAALEAERQE
KRDALERLAQEHQAALQGQQELHGRQLEERAERLRELEERVQELADARCKLEVEMALKEA
ETEDARLQGEEARARREEELEARVEAQARELQRQAEELERRLQKRNEEQELGLAELRALL
RREKDHCISELVERHEEELTAQRQAADEARREADLRAQALRDERDEQAEALRADAEERER
QLEAQLGDLQAENALLAERCEHGQQQETEERAEAVRAALADALRDFELQKEELEKRLLEK
IQVLENQLQERQSSARVSFSEEPSEGSRELTGAAVSLDTGLQEQLHEKLREENADLLARL
EQLEHRKNEEIQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRKVTQQQEKDKG
LIETLSEDRASVLQEKKHLEEELNRLRSGLLVSSTFFSPVVGAASSSQSPVEPAGAVGGE
MPLVLQEPDPERLASVACLRDDERVDSAVDASMMATQFFCFSDNPLLLSEEKQRILILER
TLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVG
PTLYFLHSESLNALDLKPAVGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKA
VPWNKKV
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaagtcaacaatggaagcacacttacttttgatactgaactt
gccgtccaaacggtggctgatctcaaacatgccatccaggttaaatacaagattgcaact
cagcaccaggtcctggtggtcaatggaggggagtgcatggttgcagatcgacgggtctgc
agctacagtgccggcactgataccaaccccatattcctgttcaataaggagatgatttta
tgtgaccgtgcccctaccattcccaagacaaccttctctattgagaacgaaatggagctg
aaagtggaggagtcccttatgatgccagcagtctttcacaccgttgcctcacgaacacaa
ctcgcagtggaaatgtatgaagttgccaagaaactttgctccttctgtgagcgcctggtt
catgatgaacatctgcaacaccaaggctgggctgccattatggccaacctggatgactgt
acgctgtcctatcaaaaactactattgaagtttgactcagcctacatgaactatcagcaa
gactttgaggacatcaaaataaaacttaccaaactggggacggctgtatcagtcatggcc
aagattcctctgctggagtgcttgacccgccacagctaccgcgagagcctggagaagtcc
agctctcccgtgcagaggcccgacgaggaggatgaggatcgctcggcccagtcggtcacg
cccagcgctgccgacacacttaggaagagccacgaactgccccctgccttcggcgccatg
ggcggagcttctctccaggctgctgacgccccccgcggcgatggcaatatgactgacagc
agtgagctgaaggcagcactgcaggaggcggattcgcccgaaaaggcagcctgcaccggg
atctcctttaatgtcaccctcctggactggatcaacgtccaggaccgacctaatgacgta
gagtccgtggtgcggaagtgctttgattccatcaacaggttggacccacgtatcattcag
ccattcttaggtgattgccgggacaccattgccaaacttgataatcagaacatgaaggcc
atcaagggactggaggacagactgtatgcccttgaccaaatgattgcaagctgtaaaaag
ttagtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagagggctgaa
aacctgaaggacacctctgtgctgcctgacctgtgtctgagtcatgcaaaccagctaatg
atcatgctgaccaaccacaggaagctgctggatatcaaacagaagtgcaccactgccaaa
caggaactcgctaacaacttacaagtccgtcttaagtggtgctgctacgtgatgctgcac
gcggaccaggacggggagaagcttcaggcgctgttgaggctgttgactgagctgctggag
agagtgcgcgtggtggacgcgctcagcaccgtcccccagatgtactgcctggccgtggtg
gaggtggtcaggaggaagatgttcatcagacactacagagcgtgggccaatgcacttgtg
aaggatgggaaacgattctatgaagctgagaaagccaaaagggaaacctttgggaagtta
ttcaggaagtcatttcttagaaatcgtttgtttcggggacttgattcatggcctccgttg
tctttttgcactcgaaagcctcgcaagtttgactttgagcttccagacatctctcttgag
gacctgcagtatctaaagtcttgctgtcctgtcgaggttcagcctttcctcagacttgct
cctgttcctccctccagggttcctacactttgcgactttgagcctttgaatcagcatgtt
cagatgcttcatcagttggtccaggctgcgcaaagtgtagatgagatgtctcaaaccatc
actgacttactaagcgaacaaagggcttcctgcagtcagagtggtcagaggtcatcctca
cagttcccccggtcagaaagcacaacagggacgacgcctacctcctccaaatcactatcc
tccctcaccatcccaccccccacctgccaggccctgcccgtccctgcacccctcgaagac
ctgtcccccgacagcatcgatgcccacacctttgacttcgagaccatcgggcaccccagc
atggaccccgtcctgcagcaaggctccctggacctggactccctggccgagagccctgag
tcggacttcatgtcggcggtgaacgagtttgtgatcgaggagaacctgtcgtcacccaac
cccatcagcgaccccaccagccccgacatgatggtggagtcgctctactcgtcggtcatc
aacgccatcgacagcaagcgcattctggacaccaccacgctggagcgggagaactcgcgg
atggccgcgctgcgcctgtgcactgaccgttaccgggcggcggctgaggagtcccagagc
ggcctgcggagcgtccgggacgacctgcaccacttccgcggcctggttgcccgcgagcag
cgggacttcagcttcgccctcaagacggtgacggtggaggtgcgtgaggcggtcagccgc
ctgcggctgtgccacgaggaggaggtccgcgagagccaccgcagcgagctggacgacctg
aggcacgagcacgaacggcaggtgcaggctctcaccgaggagctggaggccaaccgcggc
atcgtgcgcgacgtccagcgggccatgctggagctggagggccgcatggagcgcaaggag
aaggagatcgcccagctggaaggagatcgggagcgggcatctgaggagctccgcgcctcc
caccagcagagcctccaggagctggagcgccagctcttggagcgggctgaggagatcaaa
gcggcccggtcctcccgagatgagctggccggccagctgaaagctcttcagcaggacgca
gatcactggcgggaggaggcgcgccaggagatgcaggaggcagagcgggagcacttgcgg
gagctggaggaggccctgggccagcggcacagtgccgccctggaggccgagcggcaggag
aaacgagacgctctggagcgcctggcccaggagcaccaggccgcgctgcagggccagcag
gagcttcatggccggcagctggaggagcgggcagagcgcctccgggaactggaggagcgc
gtgcaggagctggccgacgcccgctgcaagctggaggtggagatggcgctcaaggaggcc
gagacggaggatgcgcgactccagggcgaggaggcgcgtgcccgacgcgaggaggagctg
gaggcgcgcgtggaggcgcaggctagggagttgcagcggcaggccgaggagctggagcgg
cgactgcagaagcgcaacgaggagcaagagctgggcctggccgagctgcgcgctctcctg
cgccgcgagaaggaccactgcatctcggagctggtggagcgccacgaggaggagctgacc
gcccagcggcaggcggctgacgaggcccggcgcgaggccgacctccgggcccaggcgctg
cgggatgagcgggacgaacaggcggaggcgctgagggcggacgccgaggagcgggagcgg
cagctggaggcgcagctcggtgacctgcaggcggagaacgcgctcctagccgagcggtgc
gagcacgggcagcagcaggagacggaggagagggccgaggccgtcagggcggcactggcc
gatgccttaagagactttgaactccagaaggaggagctggagaagagactgttagaaaaa
atacaagtacttgaaaaccagctccaagagagacaatcctctgccagggtgtcattctca
gaggagccatcggagggcagcagagagctgactggagcagcagtgtctctggacacgggt
ctgcaggagcagctccacgagaagctgagggaggagaatgcagacctgctggccagactg
gagcagctcgagcaccgcaagaacgaggagattcagaacctgaagacctcgctcatcgca
gaacagcagacaaatttcaacactgttctgacgcgcgagaaactgaagaaagaacagatc
atcaacgagctgacggagaagctccggaaagtcacccagcagcaggagaaagacaaaggc
ctgatcgagacgctgtcggaggaccgcgcctccgtgctgcaggagaagaagcacctggag
gaggagctgaaccgactgcgcagcggcttgctcgtctcctcgaccttcttcagccccgtc
gtgggcgcggcctcctccagccagagtcctgtggaacccgccggtgccgtgggcggagag
atgcccctcgtcctccaggaacccgacccagagaggctggcctcggtcgcctgtctccga
gacgacgagagggtggactctgccgtggatgctagcatgatggccacacagtttttctgt
ttcagtgataatccattgctactgtcagaggagaagcaacggatcctcatattagaacgg
actttgcacatgaaggaggaagagaacaagaggctgagtcagagactgatgtctcagagc
atgtcgtcggtgtcttcaagacattcagagaagattgctattcgagatttccaggtagga
gacttggtgctgatcatcttggacgagcgccatgacaactacgtcctctttaccgtgggt
ccgacgctctacttcctccactcagagtccctcaatgcactggacctcaaaccagcagtg
ggtgcctctagaagaccttgggttcttggaaaagttatggaaaaggagtactgtcaagca
aagaaggctcagaatcggttcaaagttcctctcggcaccaaattctacagagtgaaagca
gtgccatggaacaagaaagtgtag
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integrated database retrieval system
