KEGG   Alosa sapidissima (American shad): 121709354
Entry
121709354         CDS       T11137                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03020  RNA polymerase
asad03420  Nucleotide excision repair
asad04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121709354
  09124 Replication and repair
   03420 Nucleotide excision repair
    121709354
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    121709354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asad03021]
    121709354
   03400 DNA repair and recombination proteins [BR:asad03400]
    121709354
Transcription machinery [BR:asad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     121709354
  RNA polymerase III system
   RNA polymerase III
     121709354
  RNA polymerase I system
   RNA polymerase I
     121709354
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121709354
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NYD-SP12_N DUF7890 NA-iREase1
Other DBs
NCBI-GeneID: 121709354
NCBI-ProteinID: XP_041948616
LinkDB
Position
1:complement(37096434..37100906)
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgacgaagaggagacttacaggttatggaaaatccgtaaaacgataatgcagtta
tgccatgatcgaggatatctggtgacacaagatgagttggaccaaacactcgaagagttt
aaaagtcaattcggcgataaaccaagtgagggtcgcccacgacggacagaccttactgtt
ttggtggctcacaacgatgatcccactgatcagatgttcgttttcttcccagaggaacct
aaagttggaatcaagacgatcaaaatgtactgtcagcgcatgcaggaagaaaacattacc
agagccataatcgtagtacagatgggaatgacgccttcggcgaaacagtctcttgttgac
atggcgccaaaatacatcctggagcagtttctccaacaagagcttcttatcaacattaca
gagcacgagcttgttcctgaacacatagtcatgaccaaggaagaagtgactgagttgctg
gccagatataagcttaaggagagccagttacccaggattcaggcaggtgacccagtggct
agatactttggactgaaaagaggacaggtggtgaagatcatcagacctagtgagactgct
ggccggtacatcacatacagacttgtacagtag

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