Alosa sapidissima (American shad): 121709608
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Entry
121709608 CDS
T11137
Symbol
ss18
Name
(RefSeq) protein SSXT isoform X1
KO
K15623
protein SSXT
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121709608 (ss18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121709608 (ss18)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121709608 (ss18)
GBAF(ncBAF) complex
121709608 (ss18)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
121709608
NCBI-ProteinID:
XP_041949064
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All DBs
Position
1:49749086..49759447
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AA seq
387 aa
AA seq
DB search
MSVAFAPHRPRGKGDITPAGIQKLLDENNQLIQCIMDFQSKGKTAECSQYQQMLHRNLVY
LATIADSNQNMQSLLPAPPTQNMPMPGGMNQSGPPSQAPHGHNMPSEGPPAAHMQSQMNG
QMPGPNHMPMQGPGPNQPPNMPSGAMNMPPSSHGSMGGYNHAVPSSQGMPTQGQMNMSQG
QPMGSYGPRPSMNMQPSQGPMMHQQPPSQQYNMPPGGGGQHYQGQQNPMGMMGQVNQGNH
VMSQRPMPPYRPPQQGPPQQYPGQEEYYGEQYSHGGQGAPEGGAKNLQKLVTNSGSAQYA
QQQEAYQQGPPQQQGYPPQQQYPGQQGYPGQQQGYGPSQGGPGQYPNYPQGQGQQYAAYR
APQPGPPQAQQQRPYGYEQGQYGNYQQ
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcgtttgcacctcacagaccgcgcggaaagggtgatataactcccgcaggc
attcaaaagttactggatgaaaataaccaactgatacagtgcataatggattttcagagc
aaaggaaagacggctgaatgttcacagtaccaacagatgcttcacagaaaccttgtatac
ctggctacgatagcagactctaatcagaacatgcagtctctccttcctgctcccccaacc
cagaatatgcctatgccgggtggcatgaaccagagcggccctccttcccaggccccccac
ggacacaacatgccctctgagggcccacctgccgcacacatgcagagccagatgaatgga
cagatgcctggccctaaccacatgcccatgcagggccctggccccaaccagccccccaac
atgcctagtggtgccatgaacatgccccccagcagccacggctccatgggcggttacaac
catgccgtgccctcctcacagggcatgcccactcaaggccagatgaacatgagccaaggc
cagccaatgggaagctacggcccacgacctagcatgaacatgcagcccagtcaaggtcct
atgatgcaccagcagccaccctcccagcagtacaacatgccccctggtggcggcgggcag
cactaccagggccagcagaatcccatgggcatgatgggccaagtgaaccagggcaaccac
gtcatgagccagagacccatgcccccctacaggccaccacagcaaggtcctcctcagcag
tacccaggccaggaggagtactatggagaacagtacagtcacggtgggcagggagctcct
gaaggtggagcaaagaacttacagaagcttgttacaaactctggaagtgctcagtatgcc
cagcagcaggaggcctaccagcagggcccccctcaacagcagggctacccaccccagcag
cagtatcctggacagcagggctaccctggtcagcagcaaggctacggtccatctcaagga
ggccctgggcagtatcccaactaccctcagggtcaaggccagcagtacgcggcctacagg
gccccacaaccaggacctccacaagctcagcagcagcgtccctatggctatgaacagggg
cagtatggaaactaccagcagtga
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