Alosa sapidissima (American shad): 121709632
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Entry
121709632 CDS
T11137
Symbol
cux1a
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121709632 (cux1a)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
121709632 (cux1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121709632
NCBI-ProteinID:
XP_041949112
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All DBs
Position
5:14019886..14066082
Genome browser
AA seq
1435 aa
AA seq
DB search
MADVVLVRPGEASGMLCPPVCCAVLYRGPTLPSGLTLCSLFQIDALCKRSKESEAAFLNV
YKRLIDVPDPVPALEVVQQLQLETQRMLDGETENQKLLETLKEQDAESAEVHNHELTIKA
LQEKIEEYKRSLQSRGSDQEDVPPNDFVERERDLQEKHDALAARLQETELKTQTLETELE
AARAELKELKEKYSEEASTKADRMETVMSDLEKANQRAEAAEREMESLREQIASTSKSPH
PSPQTHKAPDTAAEDLSCSGLEAEVSVRDGEVRRLEEDVQRLQASLTQLSQSSSSRVSQL
QHELSSKDSTLKQLEKKLQEQADYEEVKKELSVLKSMDLSTTERSTAQDGYKPLEMLLLE
KCGGGQSDHHSQRSANSSLSGSSLRGDKDSSSGDAHQRLPATSIPSPSPLRSSPPPSSSQ
LLMLHRGAGSISASSSAESASSVSISANGTHPFSPADLLPPGMAGLGAGPLAPLAGKVAL
SSLLQRQLMHSFYSKALQDSSLLFPGPHGAGHHHGAAHALSASPLPSQPAAASPDAANGS
APSPSRSEGAGSASEGEDMDTAEIARQVKEQLIKHNIGQRVFGHYVLGLSQGSVSEILAR
PKPWSKLTVRGKEPFYKMRQFLSDEQNILALRSIQGRQRENPGQNLNRVFQEVPKRRTGS
EGSSRPGNITTRIRTPEGGSDEAIRSILEQAKRELQVQRADGVGESEPPPAYPRGFGSFS
QKYAHILSLVESSLPATSCGPAEAMRCVMESQAASLKASLPQTELSLLGPKLLSSPLSYS
PMALSLKKPPPSPAPLPDPPGPPVVKKEGEDTPISDTTLGGASSSLSSWRDWGNIQSDRR
WGGALLMTDDAFNQDEVKEQKPPRLPAVALPPSSLDPWKDWAGGGGGGSGSGGADSPYPQ
TSPQNSPLPSSSSSPLLALNKPAKAPVPPLTPEQYELYLHQDVDTVELTQQVKERLAKNG
ICQRMFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNTELGQGLLPLQPP
THEMTPKTSASCSPAPESPVSSAEESVKSQDPGAAPPPAPASSSTTASEQGEAAESQPGT
PLSLPLPLPLPGPPGLTIQEMVAMSPELDTYAITKKVKEVLTDNNLGQRLFGESILGLTQ
GSVSDLLARPKPWHKLSLKGREPFVRMQLWLSDPRNVEKLMDMKRMEKKAYMKRRHSSVS
EVVPSDGGVSSGDFGPSCSPQQHLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELASQ
LNLKTSTVINWFHNYRSRIRRELFIEEIQAAAGEGGARAAEGESSCDGTESDSGGGGGGS
GSVGAEDRGRSLSSSPRPNHHHHHHHHHHHHSQAHLSEDTLTTTPGTSDSSKSGGMESLF
AGAIATTMAASTTATADKNPKDSSVRRRKAANLNNIIHRLEKAANRDELGNEWEF
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtggtcctggtgcggccaggggaagcttctggaatgctctgtccgccggtg
tgctgtgctgtgctgtaccgagggcccacgctgccgtcaggcctcacgctgtgttctctg
ttccagatcgacgccctgtgcaagcggagtaaggagtccgaggcagctttcctcaacgtc
tacaagagattaattgatgtcccagaccctgtgccagccctggaggttgtgcagcagcta
cagctggagactcagaggatgctggacggggagacggagaaccagaaacttctggaaacg
ctcaaggagcaggacgcggagagcgccgaggttcacaaccacgagctcaccattaaagca
cttcaggagaagatagaggagtataagaggtcactacagagtcgggggtcagaccaggag
gatgtcccacccaacgactttgtggagagagagagggatcttcaggagaagcatgacgct
ctggccgccagactacaggagaccgagcttaaaacacagaccttagagacagaactcgaa
gcagcccgagcagagctgaaagagctgaaggagaagtatagcgaggaggcgtccacaaag
gccgacaggatggagacggtgatgtctgacctagagaaagccaatcagagagcagaggca
gcagagagggagatggagagcctgagggagcagatcgcctccaccagcaagagccctcac
ccctccccacagacacacaaggccccagacacggctgcggaggacttgtcgtgcagcggt
ctggaggcggaggtgagcgtgcgtgacggtgaggtgcggcgtctggaggaggacgtgcag
cggctacaggccagcctcacccagctcagtcagagctccagcagccgcgtcagccagctg
cagcacgagctctccagcaaggactccactctcaagcaactggaaaagaagctgcaggag
caagcagactatgaggaagtcaagaaggagctgagcgtcctcaagtccatggatctgagc
acaacagagaggtccacagcacaggatggctataagcccttggagatgcttctcctggag
aagtgcgggggcgggcagtcggaccaccactcccagcggtcagccaacagcagcctgagc
ggctcttcgctgcgtggtgataaagactcgtcatcaggagacgctcaccagcgacttcct
gccacgtccatcccgagcccctcccccctgcgcagctctccgcctccatcgtcctcccag
ctcctgatgctgcatcggggcgccggctccatctccgcgtcgtcgtcggccgagtcggcc
tcctcggtcagcatcagcgccaacggcacgcaccccttctcccccgccgacctcctcccg
ccgggcatggcgggcctgggcgccggcccgctggccccgctggccggcaaggtggccctc
agctcgctgctccagcgccagctcatgcacagcttctacagcaaggcgctgcaggactcg
tctctgctcttcccggggccgcacggcgccggccaccaccacggggcggcgcacgccctc
tcggccagcccgctgcccagccagccggccgccgccagcccggacgcggccaacggctcg
gcgccgtcgcccagccgctcggagggcgcgggcagcgcctcggagggcgaggacatggac
acggcggagatcgcgcggcaggtcaaggagcagctcatcaagcacaacatcggccagcgc
gtcttcggccactacgtgctgggcctgtcgcaggggtcggtcagcgagatcctggcgcgg
cccaagccctggagcaagctgaccgtgcgcggcaaggagcccttctacaagatgcgtcag
ttcctgtccgacgagcagaacatcctggcactgcgcagcatccagggccgccagagagag
aacccaggccagaacctgaacagggtgtttcaggaggttccgaagcgaagaaccggctcc
gaaggctcctcgaggccagggaacatcaccacacggatccgcaccccggagggcggctcg
gacgaggccatccgctccatcctggagcaggccaagagggagctgcaggtgcagagagca
gatggcgtgggagagagcgagccacctcccgcttaccctcggggctttggaagcttctcc
caaaaatatgcccacattctcagcctggtagagtcatctctgcccgccacctcctgcggc
ccagccgaagccatgcgctgtgtgatggagagccaggcggcctccctgaaggcttcgctc
ccccagacggagctctccctgctggggcccaagctgctctcgtcccccctgtcctactcg
cccatggccctctcgctgaagaagcctcctccctccccggcgcctctgccggacccccct
ggtccgccggtggtgaagaaagaaggagaggacacccccatctcggacacgaccctggga
ggagcctcctcctccttgtcctcctggagggactggggcaacatccaatcagatcgccgc
tggggcggggctctgctgatgacggacgacgcattcaaccaagacgaggtgaaggagcag
aagccccctcgcctgcctgctgtggcactgcccccctcctctctggacccctggaaggac
tgggccggtggcggcggaggtggtagcggcagcggcggcgccgactcgccgtacccgcag
acctccccccagaacagcccgctgccctcatcctcctcctcgcccctgctggcgctgaac
aagccggccaaggcgcccgtgccgccactcaccccggagcagtacgagctctacctgcac
caggacgtggacaccgtggagctcacgcagcaggtcaaggagcgcctggccaagaacggc
atctgccagcgcatgttcggcgagaaggtgcttggcctgtctcaggggagtgtgagtgac
atgctgtctcggccgaagccgtggagtaagctcactcagaagggccgagagccgttcatc
cgcatgcagctgtggctcaacacagagctgggccagggtctgctgccgctacagccaccc
acacacgagatgacccccaagacctcggccagctgcagccccgcacccgagtctccggtg
agctcggccgaggagtcggtgaagagtcaggaccccggcgccgcgcctcccccggcccca
gcctcctcgtccaccaccgcctccgagcagggcgaggcggccgagtcgcagcccggcacg
ccgctctcactgcccctgccactgccactgcccggcccaccgggcctcaccatccaggag
atggtggccatgtcccccgagctggacacctacgccatcaccaagaaggtcaaggaggtg
ctcaccgacaacaacctcggccagcgcctgtttggtgagagcatcctgggcctgacccag
ggctcagtgtcggacctgctggcgcggcccaagccctggcacaaattgagcctgaaggga
cgcgagcccttcgtccgcatgcagctgtggctcagcgacccccgcaatgtggagaagctc
atggacatgaagcgcatggagaagaaagcctacatgaagcgtcgccacagctcagtgagc
gaggtggtcccaagtgacggtggcgtgtcgtctggagacttcggtccatcctgcagtccc
cagcagcatctgaagaagccgcgtgtggtgcttgccccagaggagaaggaggccctgaag
cgcgcctaccagcagaaaccctacccctcgcccaagaccattgaggagctggccagtcag
ctcaacctcaagaccagcaccgtcatcaactggttccacaactacaggtcccgtatccgc
cgtgagcttttcatcgaggagatccaggcagcagcaggagaaggtggggcacgtgcggcc
gagggagagagcagctgcgacggcaccgagtcagacagcggcggcggcggaggtggcagt
ggcagcgtgggcgcggaagaccggggcaggagcctctccagcagccccaggcccaaccac
caccaccaccaccaccatcaccaccaccaccactcccaagcccacctgtcggaggacacc
cttaccaccacaccagggaccagcgacagctccaagtccggcgggatggagagtctcttc
gccggggccatcgccaccaccatggccgcctccaccacagccacagccgacaagaaccca
aaggacagcagcgtgcggcggaggaaagcggccaacctcaacaacatcattcaccggctg
gagaaggccgccaaccgcgatgagctgggtaacgagtgggagttctga
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integrated database retrieval system
