KEGG   Alosa sapidissima (American shad): 121709693
Entry
121709693         CDS       T11137                                 
Symbol
per1a
Name
(RefSeq) period circadian protein homolog 1a
  KO
K21944  period circadian protein 1
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asad03400]
    121709693 (per1a)
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121709693 (per1a)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 121709693
NCBI-ProteinID: XP_041949204
LinkDB
Position
5:complement(11297177..11319886)
AA seq 1434 aa
MSNANSEATVSSNASSAVARAEEDDDASHEASSPGLTGSSLSSGKKKTSNGKRDTRAPRR
ANLDDTDGLSSGNDSAERESESHGGREASTCSSHNGKDSAMETTESKSSNSQSPSPPSSS
LAYSLLSGGSSEQDPPSTSGCSSDHPARLQTQRELLKALRELKIRMPADHRGKGRSSTLA
SLQYALNCVKQVRANQEYYHQWNVEETHGCCLDLSTFTVEELDNITSEYTLQNTDTFSVA
VSFLSGKVVYISPHASSRLCCKPEHLQGALFSELLAPQDVSTFYSSTSPCKLPAWPSCNS
SDSPGDCAQEKSMFCRISGVKGTEAEVRYHPFRLTPYQLTLRDSDISQPQPCCLLIAERV
HSGYEAPRIPDDKRIFTTSHSPSCLFQEVDERAVPLLGYLPQDLVGNPMLYYLHPEDRPL
MVAIHKKILQFAGQPFDHSSLRMCARSGEYLYIDTSWSSFINPWSRKVAFIVGRHKVRTS
PLNEDVFTPPAGSEVRSVSPDVAQLSGQIHRVLVQPVHSGSSQGYGSLGSGTEHHASTGS
SSESTGPVKELRNQPLSPMMTFQQMCKDIHMVKRNGQDVFMESRNRPQPCRHSNTVARVT
QKSAEILKEGPQLAPPALKAPQIPTSPPRKEQVASYSYQQLNCLDSIIRYLDSCNVPNTV
KRKCGSSSCTTSSTSDDDKQDAAGGVKGIAKTLVAADGSKPPGPTHALTPLALHCKAESV
ISITSLCSFSSTIVHVGDKKPPESDIVMMEEAPTTPTFTPTPTPSTPTPAASSTLQPPPQ
ACTSTLPDKDNRRTGSASTPGGGAGTGAGVVPVGLTKEVLSTHTQQEERAFLNRFKDLSE
LLVPQPIPSPPRRQATTPAAKGTGVRSSQDYPAGGPGGRKRGRGGKRRKHHPEGSQLGSY
PPPFTMPPRAPAALPKMANHGCFPTSLHLPMGPQTSSSSWPASVGSQASIPPSLPQFAPG
CLPYYPIYPSQMPTSQVMPPMVPPMMALILPNYMYPQLNAPMPNLGQNMGGAPQLPPQMN
FLAPQFNTAIPQMNSMNPVLNPAAVGQPNLMPSMMPFNPAMPAVPQPFYNPNVMYPPFPN
ATPAVPTPGVPFAHGPSRSCTPQSGGLANGERDETDSPLFHSRCSSPLNLVQLEELAVTR
AESSAAGLRQTPPPCGVASQGKPGVPTSVIRSDSEDPKGDDNVETNDSNHDAMSTSSDLL
DLLLQEDARSGTGSAASGSGSSGSGSGSSGSGSNGCSTTGSGTTTGSSNTSKYFGSVDSS
ENSHSHKQPTGGAADDQFIKYVLQDPIWLLMANTDDKVMMTYQLPSRDRETVLQQDLAIL
KSLQKQQPRFTEQQRKELGQEHPWILTGGLPDAINITSCIDCSGTAVEPASSPVHKDEPH
SDLRLPEEVDNSGAQTASDTTAEGAERRAARPSLGPPSDEELEVTSSVEVCAEE
NT seq 4305 nt   +upstreamnt  +downstreamnt
atgagtaatgccaattctgaggccactgtcagtagcaatgccagcagtgcggtggccagg
gcagaagaggacgatgatgccagtcatgaggccagctccccggggctgactggcagctcg
ctgtccagtgggaagaaaaagacatccaatgggaaaagggacaccagggctcctcgacga
gccaaccttgatgacacggacggcctgtccagcgggaatgactcggcagagagggaaagc
gagagccatggtggccgagaggcctccacatgcagctcgcacaacgggaaagactcggcc
atggagactacagaaagcaagagctcaaactcccagagcccgtctccccccagcagctcg
ctggcctacagccttctgagcggcggcagctcggagcaggatccccccagcaccagcggc
tgcagcagcgaccacccggcgcggctgcagacccagcgcgagctgcttaaggccctgcgt
gagctcaagatccgcatgcccgctgaccacaggggcaagggccgatccagcacgctggcc
tctctccagtacgccctcaactgcgtcaagcaagtccgcgcaaaccaagagtactaccac
cagtggaatgttgaggagacccacggatgctgtttggatctctccactttcactgttgag
gaactggacaacatcacctctgagtacacactccaaaacacggacacattctcagtggca
gtgtccttcctgtcgggcaaggtggtgtacatctctccccatgcctcatcccggctgtgc
tgtaagcctgagcacctgcagggggcgctcttctcagagctactggcgccacaggacgtc
agcaccttctacagcagcacctcaccctgcaagctgcctgcctggccctcctgcaacagc
tcagactccccaggagactgtgcacaggagaagtccatgttctgccggatcagcggtgtg
aaggggaccgaggctgaggtgcgctaccaccccttccgcctgacgccgtaccagctgacc
ctgagggactcggacatctcccagccccagccctgctgcctcctcatcgcagagagagtg
cactctggatacgaagctcctcgtatccctgatgataaaagaatctttactacgagccac
agcccaagctgtctcttccaagaggtcgatgaaagggctgtaccgttgctaggctacctg
ccacaggacttggtgggcaatcccatgttgtactaccttcatcctgaggataggcccctg
atggtggccattcataagaagattcttcagtttgccggccagccgtttgatcactcctcc
ttgcgcatgtgtgcgcgaagtggggagtatctctacatcgacaccagctggtcctctttc
atcaacccctggagccgcaaagtggccttcatcgtgggacggcacaaagtcagaacgagt
ccactgaacgaggatgtgttcacgccccctgctggcagtgaggtgcgcagcgtgtccccc
gacgtggctcagctgagcgggcagatccaccgcgtgctggtgcagcctgtccactctggc
agctcgcagggctacggcagcctgggcagcggcaccgagcaccacgccagcaccggctcc
tccagcgagagcaccgggcccgtcaaggagctccgcaaccagccgctcagtcccatgatg
accttccaacagatgtgtaaagacatacacatggtaaaaagaaatggtcaggatgtcttt
atggagtcacgaaacagacctcaaccttgtagacattctaacacagtggctcgagtgact
cagaaatctgcagaaattctcaaagagggaccccagctggctccacctgctctgaaagcc
ccccagataccaacctcccctcccaggaaggaacaggttgcgagctactcgtaccagcag
ctcaactgcctggacagtatcatacggtacctggacagctgtaacgtgcccaacacggtg
aagaggaagtgtggctcatcctcctgcaccacctcctccacctctgatgacgacaagcaa
gacgctgccggtggagtcaaaggcatagccaagacgctggtggcagctgatgggtctaag
cccccgggtcctactcatgctctgaccccgctggctctgcattgtaaggctgagagcgtg
atttccatcacctctctgtgcagcttcagcagcaccattgtccatgtcggagacaagaaa
cctccggagtcagatattgtcatgatggaggaggctcccaccacccccaccttcacgcca
accccaaccccctccacaccgaccccggccgccagcagcacgctccagccacctccccag
gcctgcacctccacgctcccagacaaagacaaccgcaggactggatcggcatccacaccg
ggcggaggagcaggaacaggagcaggtgtggttccagtgggcctgaccaaggaggtgctg
tccactcacacgcagcaagaggagcgggccttcctcaaccgcttcaaggacctgagcgaa
ctgcttgtgcctcagcccattcccagccctccacgccggcaagccacaacgcctgcagcc
aaaggtacaggtgtccgtagctctcaagattacccagcgggagggcccggcgggcgaaag
cgaggccgagggggcaagaggcggaagcaccaccccgagggctcccagctgggcagttac
cccccacccttcaccatgcctccccgagcccccgcggccctgcccaagatggccaatcat
ggctgcttccccaccagcctgcacctccccatgggcccccagacctcctcgtcctcctgg
cccgcctctgtgggctcccaggccagcataccgcccagcctcccccagtttgccccgggg
tgcctgccttactaccccatctaccccagccagatgcccacctcacaagtcatgcccccc
atggttccgccaatgatggcattgattctgcccaactacatgtaccctcagctcaacgct
cccatgccaaacctcggccagaacatggggggcgcaccccagctgccaccccagatgaac
tttcttgccccccagttcaacaccgctattccacagatgaactcgatgaacccagttctg
aacccagcagctgttggccagcccaatttaatgccgtcgatgatgccgttcaaccctgcc
atgcccgctgtcccgcagcccttctacaaccccaacgttatgtaccccccgttcccaaac
gcaactcccgcggtccccacccctggcgtcccgttcgcccacggcccttcgcgctcctgc
acgccccagtccggcgggctagccaatggagagcgagacgagacggactcgcccctcttc
cactcgcgctgctcctcgcccctcaacctggtgcagctggaggagctggccgtcaccaga
gccgagagctcagcggctggactgcggcagacgccgcccccttgcggagtggcttcccag
gggaagccgggagtcccgacctccgtcatccgcagcgactccgaagaccccaaaggagac
gataacgtggaaacaaatgactccaaccatgatgccatgtccacctccagtgaccttctg
gacctactgctgcaggaggatgcacgttcaggaaccgggtctgccgcctctgggtcagga
tcttctggctccggttctggatcctcaggctctggttccaatggttgcagcactacaggg
agcggcacaacaactggcagcagtaacactagcaaatactttggcagcgtggactcctct
gagaattcccattcccacaagcagccaacagggggcgctgcagatgaccagttcatcaag
tacgtcctgcaggaccccatctggctcctgatggccaataccgacgacaaggtcatgatg
acctaccagctgcccagcagagacagggagacggttctgcagcaggacctggcgattctg
aagtcgttgcagaagcagcagccgcgcttcaccgagcagcaaaggaaggagctgggtcag
gagcacccgtggatcctcaccggaggcctgcccgacgccatcaacatcacgtcctgcatt
gactgcagtggcacggcagttgaacctgcgtcatcgcctgtccacaaggatgagccccac
agcgacctccggctgcccgaggaggtcgacaacagcggcgcccaaacggcttcagacacc
acagcggagggggcagagcgtcgggccgctaggcccagtctggggcctccaagtgacgag
gagctggaggtgacgtcgtccgtggaggtgtgcgcggaggagtga

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