Alosa sapidissima (American shad): 121709939 Help Entry 121709939         CDS       T11137                                  Symbol pcdh1a Name (RefSeq) protocadherin-1   KO K16498   protocadherin delta 1 Organism asad  Alosa sapidissima (American shad) Pathway asad03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:asad00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     121709939 (pcdh1a)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:asad01009]     121709939 (pcdh1a)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:asad04515]     121709939 (pcdh1a) Protein phosphatases and associated proteins [BR:asad01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      121709939 (pcdh1a) Cell adhesion molecules [BR:asad04515]  Cadherins   Protocadherins    121709939 (pcdh1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_CELSR2_9th Cadherin_2 He_PIG Motif Other DBs NCBI-GeneID:  121709939 NCBI-ProteinID:  XP_041949612 LinkDB All DBs Position 5:28800595..28867962 Genome browser AA seq 1234 aa AA seqDB search MKENTGLAFQRRELASDKKSSPKARVWLYKASMEFPLRALLLWVLLLDPRGMALVGGVLY RVPEEQPPSTLIGSLASDQGLPDSGHLYKLEVGSPYLRVDGKTGDIFTTEIPIDREDLKN CRNKGKACFLEFEVSVTDLIQNQSPRLIEGRIEVLDINDNTPQFPSPVLTLSIPENTQSG ALFPIPLATDRDTEKNGVSDYKLSAESESSSLFSLQVAEDRGEKLPQLIVLGSLDREQKD SYDLSIKVLDGGSPQRQSSALLRVVVTDANDNAPRFEKSLYEAKVAENSPIGHSVLQVKA NDSDLGPNGEIEYTLHQATDPVPKLLRIDRSTGIISVKGALDREEINSLKFYVVARDKGP TPKSSKTFVEIEVTDQNDNAPAVEIRGIGLVTHSEGVANISEDMPVGTAVALVQVSDQDE EENAVVTCVVAGDVPFQLRLASDSAAEHKKKYFLQTTTPLDYEDIREYRVQIVAVDSGNP ALSSTNSLKVQVTDINDNSPIFSPSLFEVDFKEENQPGEKILDVVAKDADSGTNAELTYR IVAEPSISGLFEIDAITGTVRARSPLDREHREKYEFQVVAADKGVPSHSGTATVVVKVLD RNDNEPKFMLNRYTFSVLENMPPLSPVGMVTVMDMDKGENAQVHLSVEPDVGKFIVQNGT GTILSSISFDREKESSYTFRLKAVDGGDPPRSSYVGVVINVLDENDNAPIVIKPSNSSFR RLSPLAAPDSRVEVVEAEDMDTGPNAELVYSITGGNPHELFRISPSDGEITLAKELTRKH SGLHRLVVRVSDRGKPTRHTTALVHIYVNETIANVSLVEALVGHSLYTPLDMDIAGDPDF DPAHRSNILYGSLAGVAGVILVIVVVVFIRHRIQRETKSGYQPGKKETKDLYTPKQGPKS SKGKKGRKGKPPKSPKPLGEEEEVSLQKSLKFNLDGVSDSPRIHLPLTYPPGSPDLGRHY RSNSPLPSIQLQAQSPSASQKHQAVQELPATNTFVGTGGDDNSTGSDQYSDYSYKANQAK YSAKTLPHRRVTFSTTNPVQDLQDSSQQSYYDSGLEESETPSSKSSSGPRIGPLALPEDH YERTTPDGSIGEMEHPENDIRSLPDVAMTGNCTQECSELGHSDACWMPGQPSPIRKTRNP PKLSTFVPYQERGSLGRLANGSARLASGGGGGGGVEEPRPRIPPSRSAYSSGVGVGGHAP SQDCPLEEVPLSVASDYPPTSPPSSHTSKREIYL NT seq 3705 nt NT seq  +upstreamnt  +downstreamnt atgaaagagaacactggtctcgcttttcaacgccgggaactggcgtctgacaaaaagtct tcgccgaaggctagggtgtggctgtacaaggcctccatggagtttcctctgagggcgctc ctactgtgggtccttctgctcgacccccgcggcatggcactagtgggaggagtcttgtac agggttcctgaggagcaacctcccagcacattaattggaagcctggcgtcggaccaaggc ctgccagacagcgggcacctgtacaagctggaggttggctctccctacctacgggtcgat ggcaagacaggggacatcttcaccaccgagatccccatcgaccgcgaggacctgaagaac tgccggaacaagggcaaggcttgcttcctggagttcgaagtgtccgtcactgacctgatc cagaaccagagcccccggctgatcgagggtcggatcgaggtgctggacattaacgacaac acaccccagttcccctcacccgtcctcaccctgtccatcccggaaaacactcagagcggg gcgctcttccctatcccgctggccactgaccgagacacggagaagaatggggtgtctgac tacaagctgtccgccgagtcagagtcttcgtcgctcttcagcttgcaggtggccgaggat cgtggcgagaagttgcctcaactcatcgtgttgggaagccttgaccgcgagcagaaggac tcgtacgacctcagcatcaaagtgctggacgggggatcccctcaacgccagagcagtgcc ttgctgagggtcgttgtcaccgatgcgaatgacaatgcacccagatttgagaaatcactc tacgaggctaaagttgccgaaaacagtcccattggacactcagtgcttcaggttaaagct aatgactctgaccttggccctaatggggagattgagtacactcttcaccaggctactgac cctgtccccaaactcttgaggatcgaccgttccactggtattatctctgtgaaaggggca ctggatcgtgaagagatcaacagtttaaagttttatgtggttgcacgggataaaggacca acacccaagtcgtccaaaacttttgttgagatcgaagtgacagaccagaacgacaatgcc cctgctgtggagatccgtggaattggcctggtcactcacagtgaaggagtcgcaaatata tccgaggacatgccagtggggacagcagttgccttagtccaagtctcagatcaggatgaa gaggagaatgcagtagtgacttgtgtggttgcaggggatgtcccattccagctgcgctta gcaagtgactctgccgccgagcacaaaaaaaagtatttcctgcagaccacgaccccgctt gactacgaggacattcgagaatatagggtccagattgtcgctgtggactcaggtaaccct gcactgtccagcacgaactcgctgaaggtgcaagtgacagatatcaatgacaactccccc atcttttcgccctcactcttcgaagttgactttaaagaggaaaaccagcctggagagaag attctagatgtggtcgccaaagatgctgacagcggcaccaacgcagagctcacttacaga atagttgctgagccctctataagcggtctcttcgaaattgatgccatcacaggtacagtg cgagcgcgcagtcctctggacagagagcacagggagaagtacgagtttcaggttgtcgca gccgacaaaggcgtgcccagtcacagcggcacagccacggtcgtggttaaggtactcgat cgcaatgacaatgagcccaaattcatgttgaatcggtacaccttctcagtactggagaac atgcctcctcttagtccagtgggcatggtgaccgttatggacatggacaaaggtgaaaac gctcaagtgcacctctcagttgagccagacgttgggaagtttatcgttcaaaatggcaca ggaaccatattgtccagcatttcttttgatcgagagaaagagagcagctacacatttcgt ctaaaagctgtagatggcggcgatcctcctaggtcatcctacgtgggcgtggtgatcaac gtcctagatgagaatgacaacgcaccgatcgtcatcaagccctcaaactcgtccttcagg cgcctgtccccattagccgccccagacagtcgcgtggaggtcgtcgaggctgaggatatg gacactggacccaatgcagagctcgtgtacagcatcactgggggcaaccctcacgaactc ttccgcatatccccatccgacggtgagattacgctggccaaggaactgacccgtaaacac agcggcctgcaccgcctcgtggtccgagtgagtgaccggggaaaaccgactcgtcacacc actgccctcgtgcacatctacgtcaacgaaaccattgcaaacgtcagcctggtggaggcg cttgtcggacacagcctctacaccccgctagacatggacattgccggtgaccctgacttt gaccccgctcatagaagtaatatcctttatgggagtctggctggtgtggccggagtcatc ctagtgatagtggtggtggtgttcatccgtcaccgcattcagagggagaccaagagtggc taccagcccggcaaaaaggagaccaaggacctctacactcccaagcagggacccaagagc agcaaaggcaagaaggggaggaaagggaagccgccaaagtcccccaagcccctcggggaa gaggaagaggtcagtctccagaaaagcctcaagttcaacctggacggtgtcagcgatagc cccaggatacacctccctctgacatacccccctggcagccccgacctgggtcgtcattac cgctccaactcgccacttccctccattcagctccaggctcaatcgccatcagcctcccag aagcaccaagctgtgcaggagctcccagccaccaacacctttgtgggaacgggcggagat gacaactccactggttcggatcagtactcggattacagctacaaggccaaccaagccaag tacagcgccaaaacacttcctcatcgccgagtgactttctccacgaccaatccagtgcag gatctgcaggactcctctcaacagagttactatgacagtggcctggaggagtcggagacg cccagcagcaagagctcgtccgggccccgcatcggacccctggccctgcccgaggaccac tacgagaggaccacccccgacggcagcatcggagagatggagcacccggaaaatgacatc cgctctctgccagacgtggctatgacgggcaactgcacccaggagtgcagcgagctcggc cactcggacgcctgctggatgcccggacagccctcgcccatccgcaagacacgcaaccca ccgaagctctccacctttgtgccttaccaggagagggggagtctggggcgcctggccaac ggcagcgcccggctggccagtggtgggggcggaggcgggggcgtggaggagcccaggccc cgcatcccgccctcccgcagtgcctactccagcggcgtcggcgtcggcggccatgccccc agccaggactgccccttggaggaggtgccgctgagcgtggccagcgattacccgcccacc agcccgccttccagccacacctccaagcgggaaatctacctgtga

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