KEGG   Alosa sapidissima (American shad): 121710031
Entry
121710031         CDS       T11137                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
  KO
K17302  coatomer subunit beta'
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:asad04131]
    121710031 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:asad04147]
    121710031 (copb2)
Membrane trafficking [BR:asad04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    121710031 (copb2)
Exosome [BR:asad04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   121710031 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st PEP5_VPS11_N ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_SPT8 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N ATG16 AAA_13
Other DBs
NCBI-GeneID: 121710031
NCBI-ProteinID: XP_041949794
LinkDB
Position
1:complement(17355611..17371027)
AA seq 1206 aa
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWTCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSNSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESSSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYLSEKVATSQETNEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNAAMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDHCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLSKV
NQKAAESLADPTEYENLFPGLKEAFVAEQFLRETSQGKTRPATDYPLVTPNEERNVLEEA
RGYEPKEVPAPVEPNEERNVLEEVGGHEPKEVPAPAEPIEEKNIVEEARGHEPKEVPAPA
EQVSVQQTEPLEAEPVAEAPLVEVPAVQAPVVEAPAVGASMFASVMAAVAAPVAAAVAAV
SAPTPEPAAEEEAAEEEEEEAAEASMFASVMAAVAAPVAAAVAAVSAPTPEPAAEEEEEA
VVEVPVEEVAAPVKEVAPTEEEVASAEKDVAPAEKDVAPTKEEVAPVEEEVAPVEEEVAP
VEEEVAPVEEEVAPVVVEVAPVEEEVAPVEEEVAPVVAEVAPVVDIVAPVVDVVAPVVEV
VAPVDGVVAPEEEKTPTAAAATAAAAAADDLEDDEILDELEDDLDNMELDDIDTTDVNLD
DDFLDD
NT seq 3621 nt   +upstreamnt  +downstreamnt
atgcctctccggctggacatcaagcgcaagctaacggcccggtcagaccgcgtcaagagc
gttgacctacacccgactgaaccatggatgttggcgagcctttacaatggcagcgtgtgc
gtctggaaccacgaaacacaaaccctggtgaagacctttgaggtctgtgatttacctgtg
cgagcatccaagtttgttgccaggaaaaactgggtcattactggggcagatgacatgcaa
attcgtgtatttaactacaacacactggagcgtgttcacatgtttgaggcacactctgac
tacatccgctgcatcgctgtccaccccacacagccttacatcctcactagcagcgatgac
atgctcatcaagctctgggactgggataagaagtggacgtgcagtcaggtgtttgagggc
cacacacattacgtcatgcagatcgtcatcaacccgaaagacaacaaccagtttgccagt
gcttccctggatagaaccattaaggtatggcagctgggctccaactcccctaacttcacg
ctggagggccacgagaaaggagtgaactgcatagactactacagcggaggagacaagccc
tacctgatatcaggggcagacgacagactggtgaagatctgggactaccagaataagacc
tgtgtgcagactttggagggccatgctcagaacgtgtcctgtgtgagcttccacccagag
ctgcccatcatcatcacaggctcagaggatggcacggtgcgtatctggcattccagtacg
taccgcctggagagcacgctgaactatggcatggagcgtgtgtggtgcgtgtgcggcctg
cgtggctccaacaacgtggccttgggctatgatgaaggcagcatcatcatcaagctgggt
cgtgaggagccagccatgtccatggacaccaatggaaagattatctgggccaaacactcg
gaggtgcagcaggccaacctgaaggccatgggggacacggagattaaggacggcgagaga
cttcctctggctgtcaaagacatgggcagctgtgagatctaccctcagaccatccagcac
aaccccaacggcaggtttgttgtggtgtgtggagacggagagtacatcatctacacagcc
atggctctgaggaacaagagcttcgggtcagcacaggagtttgtctgggcccacgactcc
tcagagtatgccatcagggagtccagcagtgtggtaaaaatcttcaagaatttcaaggag
aagaaatcttttaagcctgactttggtgcagaaggtatttatggtggtttcctgctgggc
gtccgttctgtgaatggcttggccttctatgactgggaaaacacagagctgattcggcgc
attgagatccagcctaaacatatcttctggtccgactctggagagctggtgtgcatcgcc
acagaggagtccttcttcatcctacgctacctgtccgagaaggtggccacctcccaggag
acgaacgagggagtgaccgaggacggcattgaggacgcttttgaggtcctgggggagatt
caggagattgtgaagacaggcctgtgggtgggagattgcttcatctacaccagctctgtc
aacagactcaactactatgttggaggagagatcgtcaccatcgctcacctggacaggacc
atgtacttgctgggctacatccctaaggatgaccgactgtacttgggcgataaagagctg
aacatcgtcagctattcattgttggtgtcagttttggagtaccaaacggcagtcatgcgc
agagacttcagcatggccgacaaggtcctacccacaatccccaaagaacagaggacccgc
gtggcccacttcctggagaaacagggcttcaagcagcaggctctggccgtgtccactgac
ccagagcacaggtttgagctggccctgcagctgggagagctcaagatcgcctatcagctg
gctgtggaggccgagtcggagcagaagtggaagcagctggcagagctggccatcagcaag
tgccagtttggtttggcgcaggagtgcctccaccacgcccaggactacgggggcctgctg
ctgctagccaccgcctcgggcaacgctgccatggtgggcaagctggccgagggagcggaa
cgcgacggcaaaaacaacgtggcattcatgacctacttcctgcaggggaaactggaccac
tgcctggagctcctcatcagaaccaaccgcctacctgaggcggccttcctcgcccgtact
tacctgcccagccaggtgtccagggtggtgaaactgtggagggagtctctgtctaaggtg
aaccagaaggcagcagagtctctggccgaccctactgagtatgagaacctgttccctggc
ctgaaggaggccttcgtggctgagcagttcctccgggagaccagccagggcaagacccgg
ccggccaccgactacccgctggtcacgcccaacgaggagaggaatgttttagaagaggcg
cgaggctacgagcccaaagaagtccctgcacctgttgagcccaacgaggagaggaatgtt
ctagaagaggttggaggccacgagcccaaagaagtccctgcacctgccgagcccatcgag
gagaagaatattgtagaagaggcacgaggccacgagcccaaagaagtccctgcacctgcc
gagcaggtgtctgtgcagcagacggaacccctggaggctgagccagtggcagaggccccg
ttagtagaggtcccggcggtacaggccccggtggtagaggccccggcagtgggagccagc
atgtttgcatcagtgatggcagcagtagcggcccctgtggcggcagcagtggccgccgtg
agcgcccctacacctgagccagccgctgaggaagaggcagcagaggaggaagaggaggaa
gcggcggaagccagcatgtttgcatcagtgatggcagcagtagcggcccctgtggcggca
gcagtggccgctgtgagcgcccctacacctgagccagccgctgaagaagaggaggaagca
gtggtggaagtacctgttgaagaggtggcagcacctgttaaagaagtggcgcctactgaa
gaggaagtagcgtctgctgaaaaggacgttgcgcctgctgaaaaggacgttgcgcctact
aaagaggaagtggcgcctgttgaagaggaagtggcgcctgttgaagaggaagtggcgcct
gttgaagaggaagtggcgcctgttgaagaggaagtggcgcctgttgtagtggaagtggcg
cctgttgaagaggaagtggcgcctgttgaagaggaagtggcgcctgttgtagcggaagtg
gcgcctgtggtagacatagtggcacctgtggtagacgtagtggcacctgtggtagaggta
gtggcacctgtagatggggtggtggcaccagaggaagagaagacccccacagcagcagca
gcaacagcagcagcagcagcagcagacgacctagaggacgacgagatcctggatgagctg
gaggatgaccttgacaacatggaacttgacgacattgacaccacagacgtaaaccttgat
gatgacttcctagatgactaa

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