Alosa sapidissima (American shad): 121711226
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Entry
121711226 CDS
T11137
Symbol
col10a1b
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
asad Alosa sapidissima (American shad)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
121711226
NCBI-ProteinID:
XP_041950548
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Position
6:3924910..3930506
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AA seq
661 aa
AA seq
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MDLRLNCVLLLVVALAEATPERYHYQVKKHHPPPPVKAHPIPGEPGPQGSPGLPGPQGPP
GAPGAPGKSGVGHPGPKGPPGPPGAPGYSATGKPGNPGSPGKPGANGLPGAKGHAGPPGA
MGPRGASGSPGTPGPAGYSAVGKPGPVGSPGPMGPSGGMGPSGSPGMPGMPGQKGERGVG
IPGSPGGPGGMGPMGPVGPPGKSGIGAPGATGHPGDPGKPGGPGRDGIPGTPGQPGLKGH
PGPPGVGAPGKSGVNGSPGMPGQHGPKGPQGPAGQPGSPGLPGVGKPGPHGIPGDRGAPG
SPGTTGQKGEPGPTGFTGAPGAIGPIGPAGPQGARGFQGEQGAMGAKGDMGGMGPQGPKG
LKGDQGHQGLTGKPGIPGTVGPTGPTGHMGHQGQKGEQGYTGAPGIPGTKGPEGVKGHPG
PPGPRGERGENGFPGGRGPVGPSGPSGIPGLKGHPGPPGAPGPAGVIAKGMSGPQGPPGP
PGARGHDGLPGPSGPPGAPGPPGEVIYHHEKSMPIKSHEVMPVAHELVKAPMSAFSAVLT
RAYPPAGSPIAFETVLYNGEQHYDPSSGIFTCQVPGLYYFAYHMHVNGANLLVALYKNGQ
PVVFTYDEYNKGFLDQMSGSAVLELHAHDTVYIAVPDEESNGVFAADNVHCSFSGFLIAA
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctccgactcaattgcgttctacttctggtggtggccttggcagaggccacccca
gaaagataccactaccaagtgaagaagcaccaccctccacctccagtcaaggcccaccct
atccctggggagccaggacctcaaggtagccctggattacctggaccacaagggcccccc
ggagcccctggagcacctggaaaaagtggcgttggacaccctggaccaaagggtccccct
ggaccaccaggagcacccggctactctgcaactggcaagcccggtaacccaggatcccct
gggaagcctggcgccaatggtcttcctggggcaaaaggacatgctggtcctccaggtgca
atgggccctagaggggcatcaggtagccctggaacccctggacctgctggatactctgct
gttggaaaacctggacctgtaggatctccagggccaatgggaccaagtggtggaatggga
ccttctggttcacctggcatgccaggaatgccaggtcaaaaaggtgaaagaggtgtgggc
attccaggctcaccaggtggcccaggtggaatgggaccaatgggtcccgttggtccacct
ggaaagtctggaatcggggcaccaggtgcaacaggacatcctggtgatcctggaaagcca
ggtggcccaggtagagatggtattccaggaactcctggtcaaccaggtttaaaaggccac
cctggccctccaggagtgggcgctccaggtaaatctggagtaaatggtagccctggcatg
cctggccaacatgggcctaaaggtccacaaggacctgccggacagccagggtctccaggt
ctaccaggtgttggcaagccagggccacatggaattccaggagacagaggtgcaccaggt
tctccaggtacaacagggcagaaaggtgagccaggcccaacaggatttacaggtgctcca
ggagctattggtcccataggcccagctggtcctcagggagctaggggatttcagggagag
caaggtgctatgggtgctaaaggtgatatgggaggcatgggacctcaagggccaaagggt
cttaagggtgatcagggacatcaaggtttaacaggaaagccaggtattccaggtactgtt
ggaccaactggccctacaggtcatatgggacatcaaggtcaaaagggtgagcagggttat
actggtgcaccaggtattccaggtacaaaggggccagaaggagttaaggggcatccagga
ccacctggaccaagaggagagcggggagaaaatgggttcccagggggtagagggccagtt
gggccaagtggtccaagtggaatcccagggcttaaaggtcatccaggtcccccaggtgct
cctgggcccgcaggtgtcattgctaagggaatgtctggtcctcaagggccaccaggacct
cctggtgccagaggtcatgatggtctcccaggtccatctggacccccaggagcccctggc
ccaccaggtgaggtcatttaccatcatgagaagagcatgccaataaaatcccatgaggtt
atgcctgttgctcatgagttggttaaggccccaatgtctgccttttcggctgttctgacc
agggcttacccaccagcaggttcccctattgcctttgagaccgttttgtacaacggtgag
caacattatgatcctagctctggaatctttacctgccaagtccctggactctattacttt
gcttaccatatgcatgtcaatggggcaaatctcttggttgcactttacaaaaatggtcag
ccagtggttttcacttatgacgagtataataagggattcctggatcaaatgtctggaagt
gctgttcttgagttgcacgctcatgacacagtttacatcgcagttcctgatgaggaatct
aatggcgtgtttgctgctgataatgttcactgctctttctctggtttcctaattgccgca
acgtga
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