KEGG   Alosa sapidissima (American shad): 121711226
Entry
121711226         CDS       T11137                                 
Symbol
col10a1b
Name
(RefSeq) collagen alpha-1(X) chain
  KO
K19479  collagen type X alpha
Organism
asad  Alosa sapidissima (American shad)
SSDB
Motif
Pfam: Collagen C1q BclA_C
Other DBs
NCBI-GeneID: 121711226
NCBI-ProteinID: XP_041950548
LinkDB
Position
6:3924910..3930506
AA seq 661 aa
MDLRLNCVLLLVVALAEATPERYHYQVKKHHPPPPVKAHPIPGEPGPQGSPGLPGPQGPP
GAPGAPGKSGVGHPGPKGPPGPPGAPGYSATGKPGNPGSPGKPGANGLPGAKGHAGPPGA
MGPRGASGSPGTPGPAGYSAVGKPGPVGSPGPMGPSGGMGPSGSPGMPGMPGQKGERGVG
IPGSPGGPGGMGPMGPVGPPGKSGIGAPGATGHPGDPGKPGGPGRDGIPGTPGQPGLKGH
PGPPGVGAPGKSGVNGSPGMPGQHGPKGPQGPAGQPGSPGLPGVGKPGPHGIPGDRGAPG
SPGTTGQKGEPGPTGFTGAPGAIGPIGPAGPQGARGFQGEQGAMGAKGDMGGMGPQGPKG
LKGDQGHQGLTGKPGIPGTVGPTGPTGHMGHQGQKGEQGYTGAPGIPGTKGPEGVKGHPG
PPGPRGERGENGFPGGRGPVGPSGPSGIPGLKGHPGPPGAPGPAGVIAKGMSGPQGPPGP
PGARGHDGLPGPSGPPGAPGPPGEVIYHHEKSMPIKSHEVMPVAHELVKAPMSAFSAVLT
RAYPPAGSPIAFETVLYNGEQHYDPSSGIFTCQVPGLYYFAYHMHVNGANLLVALYKNGQ
PVVFTYDEYNKGFLDQMSGSAVLELHAHDTVYIAVPDEESNGVFAADNVHCSFSGFLIAA
T
NT seq 1986 nt   +upstreamnt  +downstreamnt
atggacctccgactcaattgcgttctacttctggtggtggccttggcagaggccacccca
gaaagataccactaccaagtgaagaagcaccaccctccacctccagtcaaggcccaccct
atccctggggagccaggacctcaaggtagccctggattacctggaccacaagggcccccc
ggagcccctggagcacctggaaaaagtggcgttggacaccctggaccaaagggtccccct
ggaccaccaggagcacccggctactctgcaactggcaagcccggtaacccaggatcccct
gggaagcctggcgccaatggtcttcctggggcaaaaggacatgctggtcctccaggtgca
atgggccctagaggggcatcaggtagccctggaacccctggacctgctggatactctgct
gttggaaaacctggacctgtaggatctccagggccaatgggaccaagtggtggaatggga
ccttctggttcacctggcatgccaggaatgccaggtcaaaaaggtgaaagaggtgtgggc
attccaggctcaccaggtggcccaggtggaatgggaccaatgggtcccgttggtccacct
ggaaagtctggaatcggggcaccaggtgcaacaggacatcctggtgatcctggaaagcca
ggtggcccaggtagagatggtattccaggaactcctggtcaaccaggtttaaaaggccac
cctggccctccaggagtgggcgctccaggtaaatctggagtaaatggtagccctggcatg
cctggccaacatgggcctaaaggtccacaaggacctgccggacagccagggtctccaggt
ctaccaggtgttggcaagccagggccacatggaattccaggagacagaggtgcaccaggt
tctccaggtacaacagggcagaaaggtgagccaggcccaacaggatttacaggtgctcca
ggagctattggtcccataggcccagctggtcctcagggagctaggggatttcagggagag
caaggtgctatgggtgctaaaggtgatatgggaggcatgggacctcaagggccaaagggt
cttaagggtgatcagggacatcaaggtttaacaggaaagccaggtattccaggtactgtt
ggaccaactggccctacaggtcatatgggacatcaaggtcaaaagggtgagcagggttat
actggtgcaccaggtattccaggtacaaaggggccagaaggagttaaggggcatccagga
ccacctggaccaagaggagagcggggagaaaatgggttcccagggggtagagggccagtt
gggccaagtggtccaagtggaatcccagggcttaaaggtcatccaggtcccccaggtgct
cctgggcccgcaggtgtcattgctaagggaatgtctggtcctcaagggccaccaggacct
cctggtgccagaggtcatgatggtctcccaggtccatctggacccccaggagcccctggc
ccaccaggtgaggtcatttaccatcatgagaagagcatgccaataaaatcccatgaggtt
atgcctgttgctcatgagttggttaaggccccaatgtctgccttttcggctgttctgacc
agggcttacccaccagcaggttcccctattgcctttgagaccgttttgtacaacggtgag
caacattatgatcctagctctggaatctttacctgccaagtccctggactctattacttt
gcttaccatatgcatgtcaatggggcaaatctcttggttgcactttacaaaaatggtcag
ccagtggttttcacttatgacgagtataataagggattcctggatcaaatgtctggaagt
gctgttcttgagttgcacgctcatgacacagtttacatcgcagttcctgatgaggaatct
aatggcgtgtttgctgctgataatgttcactgctctttctctggtttcctaattgccgca
acgtga

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