KEGG   Alosa sapidissima (American shad): 121711231
Entry
121711231         CDS       T11137                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03082  ATP-dependent chromatin remodeling
asad03083  Polycomb repressive complex
asad04110  Cell cycle
asad04330  Notch signaling pathway
asad04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121711231
   03083 Polycomb repressive complex
    121711231
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    121711231
   04350 TGF-beta signaling pathway
    121711231
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    121711231
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:asad03036]
    121711231
Enzymes [BR:asad01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121711231
Chromosome and associated proteins [BR:asad03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121711231
   HDAC complexes
    Sin3A-HDAC complex
     121711231
    BRAF-HDAC complex
     121711231
    REST complex
     121711231
    SHIP complex
     121711231
    MiDAC complex
     121711231
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121711231
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121711231
  Chromatin remodeling factors
   NuRD complex
    121711231
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121711231
NCBI-ProteinID: XP_041950558
LinkDB
Position
6
AA seq 489 aa
MAYTLSTGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEMTKYHSDDYIKFLRSIRPDNMSEFSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGAVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYE
QIFKPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTDIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTNEY
MDKIKQRLFENLRMLPHAPGVQMQAIPEDSIPDDNVDEDTEDPDKRLSIRASDKRIACDE
EFSDSEDEGEGGRRNVANHKKGAKRARVEEDKKEGEEKKVEVKEEEKAKETSTEKPDTKS
VKSEQTSSA
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcttacacgctttcaactggtaccaaaaagaaggtctgctactattatgacggtgat
attggaaactactattatggccaagggcaccctatgaaaccccataggatccgcatgact
cacaacctgctgttaaactatggactgtacagaaaaatggagatatataggccgcataag
gccactgcagaagaaatgacaaagtaccacagtgacgactacataaaattcctgcggtct
attcgtccagacaacatgtcagagttcagcaagcagatgcaacgcttcaatgttggggag
gactgcccagtgttcgatgggttgtttgagttctgccagctctccacaggtggctcagcc
gctggagctgtgaagttgaacagacagcagacggacatcgctgtgaactgggcaggtggt
ctccaccatgccaagaagtcggaggcctcggggttctgttacgttaatgacattgtcctc
gccattcttgagttgctgaagtatcatcaaagagtgctctacattgacatcgacatccat
catggtgatggggtggaggaggccttctacaccactgaccgagtcatgactgtgtccttc
cataagtacggagagtatttccccgggacaggagacctcagggatattggcgctggaaag
ggcaaatactatgcggtcaacttccccctgagagacggtattgatgatgaatcttacgag
cagatattcaaaccagtgatggccaaggtgatggagatgtaccagcccagtgcggtggtt
ctgcagtgcggtgcagactctctgtcaggagacaggctgggctgcttcaacctcaccatc
cgtggccatgccaagtgtgtggagtacatgaagtccttcaacctgccactgctcatgctg
ggtggaggcggttacaccatccgcaacgtggcccgctgctggacctacgagacggctgtc
gccctggacacggacatccctgacgagcttccatacaatgactactttgagtactttggc
ccagacttcaagctgcacatcagtccatccaacatgaccaaccagaacactaatgagtac
atggacaaaatcaagcagcgtctgtttgagaacctgcgcatgctgccccacgctccaggc
gtgcagatgcaggccatcccagaggacagcatccccgacgacaacgtggacgaggacacc
gaggacccagacaagcgcttgtccatccgtgcgtctgataagaggatagcgtgcgatgag
gagttctccgactctgaggacgagggagagggcggccggaggaacgtggccaatcacaag
aaaggagccaagcgagcccgcgtggaggaggacaaaaaagagggagaggagaagaaagtt
gaagtgaaggaggaggagaaggccaaggagactagcactgagaagccggacacaaaaagc
gtgaagagcgaacagaccagcagtgcctga

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