Alosa sapidissima (American shad): 121711348
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Entry
121711348 CDS
T11137
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04137
Mitophagy - animal
asad04140
Autophagy - animal
asad04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121711348 (hif1ab)
04137 Mitophagy - animal
121711348 (hif1ab)
04148 Efferocytosis
121711348 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121711348 (hif1ab)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121711348 (hif1ab)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Autophagy_act_C
Motif
Other DBs
NCBI-GeneID:
121711348
NCBI-ProteinID:
XP_041950789
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All DBs
Position
6
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AA seq
821 aa
AA seq
DB search
MDVGVGTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHLDKASIMR
LTISYLRMRKLLNADADVEEEESELDSQLNGFYLKALEGFLMVLSEDGDMVYLSDNVSKS
MGLTQFDLTGHSIFDFVHPCDHEEMREMLVHRTGKKGKEQNTDRSFFLRMKCTLTSRGRT
VNIKSSTWKVLHCMGHVRVQEREEVSTDCGYKEPPLTYLVLICEPIPHPSNIEVPLDSKT
FLSRHTLDMKYSYCDERITELMGYEPDDLLNKSVYEYYHALDSDHLTKTHHDLFAKGQAT
TGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDLLLSLQQTITEP
KTKKAEKEKVEMDKEEEEELEVKMVMEKTLKEEDEKEKENSELNITKLFISHSEESDSDS
LYEQLKASGSDLTLLAPAAGDTIISLDFTGPDSDLQLLKEVPLYNDVMLPSTSEKLALSP
MTSLESSPSLASPLTPDPATTATSSSPDTSSPEPSSPLNYCFTVDPDIGAEFSMDMVEKL
FAIDTEARTPFSTQDMCDLDLEMRAPYIPMDDDFQLRIPSPLETLPVGNLPMADMSSIFQ
PLPSDTSSSSPSASPFSSSSSPSHSTCSTPAPSPGVRVGRQEPLSPAPLHMLVEGQSTPK
SPLRAMHLQDSASDVQVRSLLDRLEASKLTSRMSVVDQSSSPKMQALQNNQRKRKLETTT
LAQAVGLGALLQSVDSALTTESGKRAKVLEVKGSSVLGGNKTILILPSDVASRLLSNSLE
AGVANGLPQLTRDDCEVNAPIQDRHHLLQGEELLRALDQVI
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggatgttggtgttggcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tcccgcgatgccgcccgctcccgcaggggcaaagagtcggaggtgttctacgagctggcc
caccagctgcccctgccccacaatgtgacctcccacctggacaaggcctccatcatgagg
ctcaccatcagctacctgcgtatgaggaagctgctcaatgctgacgcagatgtggaggaa
gaggagtccgagttggacagccaactcaacgggttctacctgaaggctctagagggcttt
ctgatggtgctctctgaggacggagacatggtctatctctcggacaacgtcagcaagagc
atgggactcacacagtttgatctgactgggcacagcatctttgactttgtacacccttgt
gatcacgaggagatgagagagatgttggtccacagaacaggcaagaaggggaaagagcaa
aatacagaccggagcttcttcctgcgcatgaagtgcacgcttaccagcagagggcgcaca
gtcaacatcaagtcttccacctggaaggtgctccactgcatgggtcatgtgcgtgtccag
gagcgtgaggaggtgtccaccgactgtggctacaaggagcccccactcacctacctggtg
ctgatctgcgagcccattccccacccgtccaacattgaagtgccgctggacagcaagacc
ttcctcagccgccacaccctggacatgaagtattcctactgcgacgagaggatcacagaa
ctgatgggctatgagccagatgacctgttgaacaagtccgtgtacgagtactatcacgcc
ctggactccgatcaccttaccaagacacaccacgacttgtttgccaaaggccaggccacc
actggccagtaccgcatgctggccaagaaaggtggctttgtgtgggtggagacccaggcc
acggtcatctacaaccccaaaaactcccagccccagtgtatcgtgtgcgtcaactatgtg
ctgagtggcattgtggaaggcgatctgctcctgtccctgcagcagaccatcacagagccc
aagactaagaaagcggagaaggagaaggtggaaatggacaaggaggaggaggaggagttg
gaggtgaaaatggtgatggaaaagaccttgaaggaggaggacgagaaggagaaggagaac
tctgagctgaacatcaccaagctcttcatcagccacagcgaggagagcgactccgacagc
ctctacgagcagctgaaggcgtccggctcggacctcaccctgctggcgcctgccgctgga
gacaccatcatctcactggacttcaccggacccgactctgacctgcagcttctgaaggag
gtgccactgtacaacgacgtgatgcttccttccaccagcgagaagctggccctctccccc
atgacctccctggagtcctctccgtcactggccagccccctgacccctgaccccgccacc
acggcgaccagctccagcccggacaccagctccccagagcccagtagtcccttgaattac
tgtttcactgtggacccagacatcggggctgagttcagcatggacatggtggagaagctg
tttgctatagacaccgaagcaagaaccccattcagcactcaggacatgtgtgatctggac
ctggagatgcgtgctccctacatccccatggacgacgacttccagctccgcatcccgtcg
cccctggagacactcccggtgggcaacctccccatggccgacatgagctccatattccag
ccgctgccctccgacacctcctcctcctcgccctctgcttctcccttctcctcctcctcc
tccccctcccactccacctgctccacccccgccccttctcccggtgtcagggtggggagg
caggagcccctctctcccgcgcccctgcacatgctggtagagggccaaagcacccccaaa
tccccgctgcgcgcaatgcatctccaggactctgcctcagacgtgcaggtgcgcagcctc
ctagaccggctcgaggccagcaaactcacctccagaatgtcagtggtggaccagtcatca
tctccaaagatgcaggctctgcagaacaaccaacgcaagcgcaagctggagaccaccaca
ctggcccaggcagtcggactgggtgctctgctgcagagtgtggacagcgccttaacgaca
gaatctggcaagagggccaaagtgttagaggtaaagggctccagtgtgctcggcgggaac
aagaccatcctcattctgccctctgacgtggcgagtcgtctgctaagcaactcgctggag
gcgggcgtagcaaatggcctgcctcagctgacacgtgacgactgcgaggtcaacgcgccc
atccaggaccgccaccacctgctccagggagaggagttgctgcgggcgcttgatcaagtc
atttga
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